Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00876 and H281DRAFT_00877 are separated by 142 nucleotides H281DRAFT_00877 and H281DRAFT_00878 are separated by 98 nucleotides H281DRAFT_00878 and H281DRAFT_00879 are separated by 70 nucleotides
H281DRAFT_00876: H281DRAFT_00876 - PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3), at 969,093 to 971,066
_00876
H281DRAFT_00877: H281DRAFT_00877 - large conductance mechanosensitive channel, at 971,209 to 971,655
_00877
H281DRAFT_00878: H281DRAFT_00878 - threonine dehydratase, at 971,754 to 972,788
_00878
H281DRAFT_00879: H281DRAFT_00879 - acetylornithine deacetylase, at 972,859 to 974,109
_00879
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 970.838 kb on + strand, within H281DRAFT_00876 at 970.890 kb on + strand at 970.951 kb on + strand at 970.951 kb on + strand at 970.951 kb on + strand at 970.952 kb on - strand at 970.952 kb on - strand at 970.952 kb on - strand at 971.064 kb on + strand at 971.064 kb on + strand at 971.167 kb on + strand at 971.171 kb on - strand at 971.368 kb on - strand, within H281DRAFT_00877 at 971.431 kb on - strand, within H281DRAFT_00877 at 971.619 kb on + strand at 971.690 kb on - strand at 971.706 kb on + strand at 971.706 kb on + strand at 971.755 kb on + strand at 971.884 kb on - strand, within H281DRAFT_00878 at 972.019 kb on + strand, within H281DRAFT_00878 at 972.019 kb on + strand, within H281DRAFT_00878 at 972.020 kb on - strand, within H281DRAFT_00878 at 972.020 kb on - strand, within H281DRAFT_00878 at 972.020 kb on - strand, within H281DRAFT_00878 at 973.038 kb on - strand, within H281DRAFT_00879 at 973.038 kb on - strand, within H281DRAFT_00879 at 973.092 kb on + strand, within H281DRAFT_00879 at 973.092 kb on + strand, within H281DRAFT_00879 at 973.093 kb on - strand, within H281DRAFT_00879 at 973.290 kb on + strand, within H281DRAFT_00879 at 973.290 kb on + strand, within H281DRAFT_00879 at 973.291 kb on - strand, within H281DRAFT_00879 at 973.349 kb on + strand, within H281DRAFT_00879 at 973.350 kb on - strand, within H281DRAFT_00879 at 973.350 kb on - strand, within H281DRAFT_00879 at 973.401 kb on + strand, within H281DRAFT_00879 at 973.401 kb on + strand, within H281DRAFT_00879 at 973.402 kb on - strand, within H281DRAFT_00879 at 973.404 kb on - strand, within H281DRAFT_00879 at 973.425 kb on - strand, within H281DRAFT_00879
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 970,838 + H281DRAFT_00876 0.88 +1.3 970,890 + -0.5 970,951 + -0.1 970,951 + -1.0 970,951 + -3.0 970,952 - +0.1 970,952 - +0.8 970,952 - -0.8 971,064 + -0.6 971,064 + -1.0 971,167 + -0.5 971,171 - +1.5 971,368 - H281DRAFT_00877 0.36 +1.6 971,431 - H281DRAFT_00877 0.50 +1.5 971,619 + -0.6 971,690 - -0.2 971,706 + -0.6 971,706 + +0.2 971,755 + +0.5 971,884 - H281DRAFT_00878 0.13 -0.1 972,019 + H281DRAFT_00878 0.26 -0.5 972,019 + H281DRAFT_00878 0.26 -0.4 972,020 - H281DRAFT_00878 0.26 -0.2 972,020 - H281DRAFT_00878 0.26 +0.1 972,020 - H281DRAFT_00878 0.26 -0.2 973,038 - H281DRAFT_00879 0.14 -0.8 973,038 - H281DRAFT_00879 0.14 +0.4 973,092 + H281DRAFT_00879 0.19 +0.2 973,092 + H281DRAFT_00879 0.19 -1.5 973,093 - H281DRAFT_00879 0.19 +0.1 973,290 + H281DRAFT_00879 0.34 +0.4 973,290 + H281DRAFT_00879 0.34 -0.6 973,291 - H281DRAFT_00879 0.35 +0.1 973,349 + H281DRAFT_00879 0.39 +1.0 973,350 - H281DRAFT_00879 0.39 -0.8 973,350 - H281DRAFT_00879 0.39 +0.7 973,401 + H281DRAFT_00879 0.43 +1.1 973,401 + H281DRAFT_00879 0.43 +0.5 973,402 - H281DRAFT_00879 0.43 +0.2 973,404 - H281DRAFT_00879 0.44 -0.4 973,425 - H281DRAFT_00879 0.45 -0.3
Or see this region's nucleotide sequence