Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00873 and H281DRAFT_00874 are separated by 334 nucleotides H281DRAFT_00874 and H281DRAFT_00875 are separated by 99 nucleotides H281DRAFT_00875 and H281DRAFT_00876 are separated by 50 nucleotides
H281DRAFT_00873: H281DRAFT_00873 - hypothetical protein, at 966,003 to 966,494
_00873
H281DRAFT_00874: H281DRAFT_00874 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 966,829 to 968,439
_00874
H281DRAFT_00875: H281DRAFT_00875 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 968,539 to 969,042
_00875
H281DRAFT_00876: H281DRAFT_00876 - PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3), at 969,093 to 971,066
_00876
Position (kb) 966
967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 965.859 kb on + strand at 965.859 kb on + strand at 965.860 kb on - strand at 965.860 kb on - strand at 965.965 kb on + strand at 965.966 kb on - strand at 965.966 kb on - strand at 966.152 kb on - strand, within H281DRAFT_00873 at 966.276 kb on + strand, within H281DRAFT_00873 at 966.277 kb on - strand, within H281DRAFT_00873 at 966.277 kb on - strand, within H281DRAFT_00873 at 966.277 kb on - strand, within H281DRAFT_00873 at 966.310 kb on + strand at 966.449 kb on + strand at 966.449 kb on + strand at 966.450 kb on - strand at 966.534 kb on + strand at 966.536 kb on + strand at 966.536 kb on + strand at 966.537 kb on - strand at 966.537 kb on - strand at 966.542 kb on - strand at 966.711 kb on + strand at 966.712 kb on - strand at 966.747 kb on - strand at 966.951 kb on + strand at 966.968 kb on - strand at 967.062 kb on + strand, within H281DRAFT_00874 at 967.062 kb on + strand, within H281DRAFT_00874 at 967.079 kb on + strand at 967.079 kb on + strand, within H281DRAFT_00874 at 967.080 kb on - strand, within H281DRAFT_00874 at 967.080 kb on - strand, within H281DRAFT_00874 at 967.080 kb on - strand, within H281DRAFT_00874 at 967.146 kb on + strand, within H281DRAFT_00874 at 967.147 kb on - strand, within H281DRAFT_00874 at 967.147 kb on - strand, within H281DRAFT_00874 at 967.187 kb on + strand, within H281DRAFT_00874 at 967.369 kb on + strand, within H281DRAFT_00874 at 967.369 kb on + strand, within H281DRAFT_00874 at 967.369 kb on + strand, within H281DRAFT_00874 at 967.370 kb on - strand, within H281DRAFT_00874 at 967.689 kb on + strand, within H281DRAFT_00874 at 967.694 kb on - strand, within H281DRAFT_00874 at 967.700 kb on + strand, within H281DRAFT_00874 at 967.867 kb on + strand, within H281DRAFT_00874 at 967.876 kb on - strand, within H281DRAFT_00874 at 967.914 kb on - strand, within H281DRAFT_00874 at 967.946 kb on - strand, within H281DRAFT_00874 at 968.215 kb on + strand, within H281DRAFT_00874 at 968.216 kb on - strand, within H281DRAFT_00874 at 968.216 kb on - strand, within H281DRAFT_00874 at 968.216 kb on - strand, within H281DRAFT_00874 at 968.218 kb on + strand, within H281DRAFT_00874 at 968.219 kb on - strand, within H281DRAFT_00874 at 968.255 kb on - strand, within H281DRAFT_00874 at 968.255 kb on - strand, within H281DRAFT_00874 at 968.300 kb on + strand at 968.300 kb on + strand at 968.498 kb on - strand at 968.498 kb on - strand at 968.538 kb on + strand at 968.539 kb on - strand at 968.774 kb on + strand, within H281DRAFT_00875 at 968.775 kb on - strand, within H281DRAFT_00875 at 968.908 kb on + strand, within H281DRAFT_00875 at 968.909 kb on - strand, within H281DRAFT_00875 at 968.930 kb on - strand, within H281DRAFT_00875 at 968.934 kb on + strand, within H281DRAFT_00875 at 968.935 kb on - strand, within H281DRAFT_00875 at 968.961 kb on + strand, within H281DRAFT_00875 at 968.972 kb on + strand, within H281DRAFT_00875 at 969.061 kb on + strand at 969.061 kb on + strand at 969.061 kb on + strand at 969.062 kb on - strand at 969.074 kb on + strand at 969.075 kb on - strand at 969.276 kb on + strand at 969.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 965,859 + +0.3 965,859 + +0.3 965,860 - -0.1 965,860 - -0.1 965,965 + -0.6 965,966 - +1.2 965,966 - -1.7 966,152 - H281DRAFT_00873 0.30 -0.9 966,276 + H281DRAFT_00873 0.55 -1.5 966,277 - H281DRAFT_00873 0.56 +0.5 966,277 - H281DRAFT_00873 0.56 +0.5 966,277 - H281DRAFT_00873 0.56 -0.4 966,310 + -0.5 966,449 + +0.2 966,449 + +0.7 966,450 - -2.6 966,534 + +0.2 966,536 + -0.2 966,536 + -0.1 966,537 - +0.4 966,537 - +0.2 966,542 - +0.2 966,711 + -0.8 966,712 - -1.9 966,747 - -0.9 966,951 + -0.0 966,968 - +0.4 967,062 + H281DRAFT_00874 0.14 +2.0 967,062 + H281DRAFT_00874 0.14 -0.4 967,079 + +1.0 967,079 + H281DRAFT_00874 0.16 -0.9 967,080 - H281DRAFT_00874 0.16 +0.8 967,080 - H281DRAFT_00874 0.16 +0.2 967,080 - H281DRAFT_00874 0.16 -1.4 967,146 + H281DRAFT_00874 0.20 +1.3 967,147 - H281DRAFT_00874 0.20 -1.1 967,147 - H281DRAFT_00874 0.20 +0.7 967,187 + H281DRAFT_00874 0.22 +0.2 967,369 + H281DRAFT_00874 0.34 -0.3 967,369 + H281DRAFT_00874 0.34 +2.1 967,369 + H281DRAFT_00874 0.34 -0.5 967,370 - H281DRAFT_00874 0.34 +1.1 967,689 + H281DRAFT_00874 0.53 -0.3 967,694 - H281DRAFT_00874 0.54 +1.5 967,700 + H281DRAFT_00874 0.54 -0.5 967,867 + H281DRAFT_00874 0.64 -0.8 967,876 - H281DRAFT_00874 0.65 -0.5 967,914 - H281DRAFT_00874 0.67 -0.1 967,946 - H281DRAFT_00874 0.69 +0.4 968,215 + H281DRAFT_00874 0.86 -0.2 968,216 - H281DRAFT_00874 0.86 -0.5 968,216 - H281DRAFT_00874 0.86 -0.1 968,216 - H281DRAFT_00874 0.86 +0.3 968,218 + H281DRAFT_00874 0.86 -0.4 968,219 - H281DRAFT_00874 0.86 -0.3 968,255 - H281DRAFT_00874 0.89 -1.1 968,255 - H281DRAFT_00874 0.89 +0.6 968,300 + -0.5 968,300 + -1.0 968,498 - +0.2 968,498 - -2.0 968,538 + +0.4 968,539 - +1.7 968,774 + H281DRAFT_00875 0.47 -1.3 968,775 - H281DRAFT_00875 0.47 -1.4 968,908 + H281DRAFT_00875 0.73 -0.6 968,909 - H281DRAFT_00875 0.73 -3.4 968,930 - H281DRAFT_00875 0.78 -0.7 968,934 + H281DRAFT_00875 0.78 -0.3 968,935 - H281DRAFT_00875 0.79 +1.8 968,961 + H281DRAFT_00875 0.84 +0.8 968,972 + H281DRAFT_00875 0.86 -0.4 969,061 + +0.6 969,061 + -0.8 969,061 + +1.4 969,062 - +0.5 969,074 + +0.3 969,075 - +0.4 969,276 + +0.5 969,277 - -1.0
Or see this region's nucleotide sequence