Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00385 and H281DRAFT_00386 are separated by 302 nucleotides H281DRAFT_00386 and H281DRAFT_00387 are separated by 61 nucleotides
H281DRAFT_00385: H281DRAFT_00385 - 2-isopropylmalate synthase, at 425,160 to 426,878
_00385
H281DRAFT_00386: H281DRAFT_00386 - hypothetical protein, at 427,181 to 427,687
_00386
H281DRAFT_00387: H281DRAFT_00387 - hypothetical protein, at 427,749 to 429,617
_00387
Position (kb) 427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 426.214 kb on + strand, within H281DRAFT_00385 at 426.496 kb on + strand, within H281DRAFT_00385 at 426.497 kb on - strand, within H281DRAFT_00385 at 426.497 kb on - strand, within H281DRAFT_00385 at 426.853 kb on + strand at 426.861 kb on - strand at 426.909 kb on - strand at 426.971 kb on + strand at 427.050 kb on + strand at 427.050 kb on + strand at 427.051 kb on - strand at 427.051 kb on - strand at 427.100 kb on + strand at 427.101 kb on - strand at 427.316 kb on - strand, within H281DRAFT_00386 at 427.621 kb on + strand, within H281DRAFT_00386 at 427.621 kb on + strand at 427.750 kb on + strand at 427.750 kb on + strand at 427.940 kb on + strand, within H281DRAFT_00387 at 427.969 kb on - strand, within H281DRAFT_00387 at 428.046 kb on - strand at 428.102 kb on - strand, within H281DRAFT_00387 at 428.307 kb on + strand, within H281DRAFT_00387 at 428.308 kb on - strand, within H281DRAFT_00387 at 428.431 kb on + strand, within H281DRAFT_00387 at 428.431 kb on + strand, within H281DRAFT_00387 at 428.452 kb on + strand, within H281DRAFT_00387 at 428.453 kb on - strand, within H281DRAFT_00387 at 428.567 kb on + strand at 428.570 kb on - strand, within H281DRAFT_00387 at 428.570 kb on - strand, within H281DRAFT_00387 at 428.570 kb on - strand, within H281DRAFT_00387 at 428.570 kb on - strand, within H281DRAFT_00387 at 428.633 kb on - strand, within H281DRAFT_00387
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 426,214 + H281DRAFT_00385 0.61 -0.9 426,496 + H281DRAFT_00385 0.78 +0.6 426,497 - H281DRAFT_00385 0.78 +0.1 426,497 - H281DRAFT_00385 0.78 -0.9 426,853 + +0.4 426,861 - -2.0 426,909 - +0.2 426,971 + +0.7 427,050 + -3.7 427,050 + -1.8 427,051 - +0.6 427,051 - +0.4 427,100 + -0.3 427,101 - -1.7 427,316 - H281DRAFT_00386 0.27 -0.9 427,621 + H281DRAFT_00386 0.87 -2.1 427,621 + +0.7 427,750 + +1.9 427,750 + +0.3 427,940 + H281DRAFT_00387 0.10 -0.3 427,969 - H281DRAFT_00387 0.12 +0.3 428,046 - +0.7 428,102 - H281DRAFT_00387 0.19 +0.9 428,307 + H281DRAFT_00387 0.30 +1.0 428,308 - H281DRAFT_00387 0.30 +0.5 428,431 + H281DRAFT_00387 0.36 +0.9 428,431 + H281DRAFT_00387 0.36 +0.4 428,452 + H281DRAFT_00387 0.38 +0.7 428,453 - H281DRAFT_00387 0.38 -2.9 428,567 + -1.3 428,570 - H281DRAFT_00387 0.44 -0.7 428,570 - H281DRAFT_00387 0.44 +0.2 428,570 - H281DRAFT_00387 0.44 -0.2 428,570 - H281DRAFT_00387 0.44 +0.8 428,633 - H281DRAFT_00387 0.47 -0.9
Or see this region's nucleotide sequence