Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00362 and H281DRAFT_00363 are separated by 172 nucleotides H281DRAFT_00363 and H281DRAFT_00364 are separated by 84 nucleotides H281DRAFT_00364 and H281DRAFT_00365 are separated by 29 nucleotides
H281DRAFT_00362: H281DRAFT_00362 - transcriptional regulator, LysR family, at 397,071 to 397,979
_00362
H281DRAFT_00363: H281DRAFT_00363 - hypothetical protein, at 398,152 to 398,340
_00363
H281DRAFT_00364: H281DRAFT_00364 - hypothetical protein, at 398,425 to 398,805
_00364
H281DRAFT_00365: H281DRAFT_00365 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 398,835 to 400,634
_00365
Position (kb) 398
399 Strain fitness (log2 ratio) -2
-1
0
1 at 397.170 kb on + strand, within H281DRAFT_00362 at 397.170 kb on + strand, within H281DRAFT_00362 at 397.171 kb on - strand, within H281DRAFT_00362 at 397.171 kb on - strand, within H281DRAFT_00362 at 397.555 kb on - strand, within H281DRAFT_00362 at 397.555 kb on - strand, within H281DRAFT_00362 at 397.885 kb on - strand, within H281DRAFT_00362 at 397.885 kb on - strand, within H281DRAFT_00362 at 397.885 kb on - strand, within H281DRAFT_00362 at 398.047 kb on - strand at 398.060 kb on - strand at 398.375 kb on + strand at 398.376 kb on - strand at 398.379 kb on - strand at 398.379 kb on - strand at 398.385 kb on + strand at 398.385 kb on + strand at 398.385 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 397,170 + H281DRAFT_00362 0.11 +0.2 397,170 + H281DRAFT_00362 0.11 -2.3 397,171 - H281DRAFT_00362 0.11 -0.3 397,171 - H281DRAFT_00362 0.11 +0.6 397,555 - H281DRAFT_00362 0.53 -0.4 397,555 - H281DRAFT_00362 0.53 -0.7 397,885 - H281DRAFT_00362 0.90 -0.4 397,885 - H281DRAFT_00362 0.90 +0.4 397,885 - H281DRAFT_00362 0.90 -0.2 398,047 - -2.0 398,060 - -0.7 398,375 + +0.3 398,376 - -0.6 398,379 - -1.6 398,379 - -0.5 398,385 + +1.4 398,385 + +0.6 398,385 + +0.5
Or see this region's nucleotide sequence