Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00360 and H281DRAFT_00361 are separated by 46 nucleotides H281DRAFT_00361 and H281DRAFT_00362 are separated by 147 nucleotides
H281DRAFT_00360: H281DRAFT_00360 - hypothetical protein, at 393,548 to 394,756
_00360
H281DRAFT_00361: H281DRAFT_00361 - (3S)-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) / enoyl-CoA hydratase domain <small>(from data)</small>, at 394,803 to 396,923
_00361
H281DRAFT_00362: H281DRAFT_00362 - transcriptional regulator, LysR family, at 397,071 to 397,979
_00362
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -2
-1
0
1 at 394.009 kb on + strand, within H281DRAFT_00360 at 394.038 kb on + strand, within H281DRAFT_00360 at 394.104 kb on - strand, within H281DRAFT_00360 at 394.149 kb on - strand, within H281DRAFT_00360 at 394.294 kb on - strand, within H281DRAFT_00360 at 395.574 kb on + strand at 396.575 kb on - strand, within H281DRAFT_00361 at 396.669 kb on + strand, within H281DRAFT_00361 at 396.670 kb on - strand, within H281DRAFT_00361 at 396.670 kb on - strand, within H281DRAFT_00361 at 397.049 kb on - strand at 397.106 kb on - strand at 397.170 kb on + strand, within H281DRAFT_00362 at 397.170 kb on + strand, within H281DRAFT_00362 at 397.171 kb on - strand, within H281DRAFT_00362 at 397.171 kb on - strand, within H281DRAFT_00362 at 397.555 kb on - strand, within H281DRAFT_00362 at 397.555 kb on - strand, within H281DRAFT_00362 at 397.885 kb on - strand, within H281DRAFT_00362 at 397.885 kb on - strand, within H281DRAFT_00362 at 397.885 kb on - strand, within H281DRAFT_00362
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 394,009 + H281DRAFT_00360 0.38 -0.3 394,038 + H281DRAFT_00360 0.41 -0.4 394,104 - H281DRAFT_00360 0.46 -0.0 394,149 - H281DRAFT_00360 0.50 -1.2 394,294 - H281DRAFT_00360 0.62 -1.1 395,574 + -0.3 396,575 - H281DRAFT_00361 0.84 +0.7 396,669 + H281DRAFT_00361 0.88 -0.2 396,670 - H281DRAFT_00361 0.88 -1.6 396,670 - H281DRAFT_00361 0.88 +0.3 397,049 - +0.5 397,106 - -0.6 397,170 + H281DRAFT_00362 0.11 +0.2 397,170 + H281DRAFT_00362 0.11 -2.3 397,171 - H281DRAFT_00362 0.11 -0.3 397,171 - H281DRAFT_00362 0.11 +0.6 397,555 - H281DRAFT_00362 0.53 -0.4 397,555 - H281DRAFT_00362 0.53 -0.7 397,885 - H281DRAFT_00362 0.90 -0.4 397,885 - H281DRAFT_00362 0.90 +0.4 397,885 - H281DRAFT_00362 0.90 -0.2
Or see this region's nucleotide sequence