Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31460 and AZOBR_RS31465 are separated by 110 nucleotides AZOBR_RS31465 and AZOBR_RS31470 are separated by 13 nucleotides AZOBR_RS31470 and AZOBR_RS31475 are separated by 38 nucleotides
AZOBR_RS31460: AZOBR_RS31460 - tripartite tricarboxylate transporter TctA, at 425,406 to 426,878
_RS31460
AZOBR_RS31465: AZOBR_RS31465 - membrane protein, at 426,989 to 427,657
_RS31465
AZOBR_RS31470: AZOBR_RS31470 - universal stress protein UspA, at 427,671 to 428,549
_RS31470
AZOBR_RS31475: AZOBR_RS31475 - chemotaxis protein CheY, at 428,588 to 429,262
_RS31475
Position (kb) 426
427
428 Strain fitness (log2 ratio) -1
0
1 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.067 kb on - strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.244 kb on - strand, within AZOBR_RS31460 at 426.495 kb on + strand, within AZOBR_RS31460 at 426.583 kb on - strand, within AZOBR_RS31460 at 426.618 kb on + strand, within AZOBR_RS31460 at 426.948 kb on + strand at 426.948 kb on + strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 428.331 kb on + strand, within AZOBR_RS31470 at 428.331 kb on + strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.455 kb on - strand, within AZOBR_RS31470 at 428.559 kb on + strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 426,066 + AZOBR_RS31460 0.45 -1.2 426,066 + AZOBR_RS31460 0.45 -1.6 426,066 + AZOBR_RS31460 0.45 -0.9 426,066 + AZOBR_RS31460 0.45 +1.3 426,067 - AZOBR_RS31460 0.45 +0.2 426,243 + AZOBR_RS31460 0.57 +0.9 426,243 + AZOBR_RS31460 0.57 -0.7 426,243 + AZOBR_RS31460 0.57 +0.2 426,244 - AZOBR_RS31460 0.57 -0.3 426,495 + AZOBR_RS31460 0.74 -0.1 426,583 - AZOBR_RS31460 0.80 +0.2 426,618 + AZOBR_RS31460 0.82 -0.3 426,948 + +0.3 426,948 + +0.3 426,949 - -1.2 426,949 - -0.2 426,949 - -1.5 426,949 - +0.2 427,589 + AZOBR_RS31465 0.90 -0.1 427,589 + AZOBR_RS31465 0.90 +0.6 427,589 + AZOBR_RS31465 0.90 -0.3 427,589 + AZOBR_RS31465 0.90 +0.3 427,590 - AZOBR_RS31465 0.90 +0.5 427,590 - AZOBR_RS31465 0.90 +0.2 427,590 - AZOBR_RS31465 0.90 +0.7 427,590 - AZOBR_RS31465 0.90 +0.0 427,590 - AZOBR_RS31465 0.90 +0.2 428,331 + AZOBR_RS31470 0.75 -0.4 428,331 + AZOBR_RS31470 0.75 +1.3 428,332 - AZOBR_RS31470 0.75 +0.2 428,332 - AZOBR_RS31470 0.75 +0.5 428,332 - AZOBR_RS31470 0.75 +0.9 428,455 - AZOBR_RS31470 0.89 +1.1 428,559 + -0.9 428,560 - +0.9 428,560 - -0.8 428,560 - +1.4 428,560 - -0.3 428,595 + +0.2
Or see this region's nucleotide sequence