Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31455

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31455 and AZOBR_RS31460 are separated by 27 nucleotides AZOBR_RS31455: AZOBR_RS31455 - C4-dicarboxylate ABC transporter, at 424,890 to 425,378 _RS31455 AZOBR_RS31460: AZOBR_RS31460 - tripartite tricarboxylate transporter TctA, at 425,406 to 426,878 _RS31460 Position (kb) 424 425 426Strain fitness (log2 ratio) -1 0 1at 424.220 kb on + strandat 424.397 kb on + strandat 424.397 kb on + strandat 424.398 kb on - strandat 424.398 kb on - strandat 424.818 kb on + strandat 424.819 kb on - strandat 424.819 kb on - strandat 424.819 kb on - strandat 425.376 kb on + strandat 425.376 kb on + strandat 425.458 kb on - strandat 425.607 kb on + strand, within AZOBR_RS31460at 425.607 kb on + strand, within AZOBR_RS31460at 425.607 kb on + strand, within AZOBR_RS31460at 425.607 kb on + strand, within AZOBR_RS31460at 425.608 kb on - strand, within AZOBR_RS31460at 425.608 kb on - strand, within AZOBR_RS31460at 425.608 kb on - strand, within AZOBR_RS31460at 425.623 kb on - strand, within AZOBR_RS31460at 425.623 kb on - strand, within AZOBR_RS31460at 425.623 kb on - strand, within AZOBR_RS31460at 426.066 kb on + strand, within AZOBR_RS31460at 426.066 kb on + strand, within AZOBR_RS31460at 426.066 kb on + strand, within AZOBR_RS31460at 426.066 kb on + strand, within AZOBR_RS31460at 426.067 kb on - strand, within AZOBR_RS31460at 426.243 kb on + strand, within AZOBR_RS31460at 426.243 kb on + strand, within AZOBR_RS31460at 426.243 kb on + strand, within AZOBR_RS31460at 426.244 kb on - strand, within AZOBR_RS31460

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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424,220 + -0.1
424,397 + -0.0
424,397 + +0.5
424,398 - -0.3
424,398 - +0.3
424,818 + +0.5
424,819 - +0.5
424,819 - +0.5
424,819 - +0.0
425,376 + +0.3
425,376 + +0.2
425,458 - +0.5
425,607 + AZOBR_RS31460 0.14 +0.9
425,607 + AZOBR_RS31460 0.14 +0.9
425,607 + AZOBR_RS31460 0.14 +0.6
425,607 + AZOBR_RS31460 0.14 +0.5
425,608 - AZOBR_RS31460 0.14 +0.7
425,608 - AZOBR_RS31460 0.14 +0.5
425,608 - AZOBR_RS31460 0.14 +0.4
425,623 - AZOBR_RS31460 0.15 -0.1
425,623 - AZOBR_RS31460 0.15 +0.2
425,623 - AZOBR_RS31460 0.15 -0.0
426,066 + AZOBR_RS31460 0.45 -1.2
426,066 + AZOBR_RS31460 0.45 -1.6
426,066 + AZOBR_RS31460 0.45 -0.9
426,066 + AZOBR_RS31460 0.45 +1.3
426,067 - AZOBR_RS31460 0.45 +0.2
426,243 + AZOBR_RS31460 0.57 +0.9
426,243 + AZOBR_RS31460 0.57 -0.7
426,243 + AZOBR_RS31460 0.57 +0.2
426,244 - AZOBR_RS31460 0.57 -0.3

Or see this region's nucleotide sequence