Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15545 and AZOBR_RS15550 are separated by 205 nucleotides AZOBR_RS15550 and AZOBR_RS15555 are separated by 143 nucleotides AZOBR_RS15555 and AZOBR_RS15560 are separated by 26 nucleotides AZOBR_RS15560 and AZOBR_RS15565 are separated by 2 nucleotides
AZOBR_RS15545: AZOBR_RS15545 - hypothetical protein, at 243,776 to 244,348
_RS15545
AZOBR_RS15550: AZOBR_RS15550 - tRNA-Ser, at 244,554 to 244,643
_RS15550
AZOBR_RS15555: AZOBR_RS15555 - transcriptional regulator, at 244,787 to 245,683
_RS15555
AZOBR_RS15560: AZOBR_RS15560 - isopropylmalate isomerase, at 245,710 to 246,306
_RS15560
AZOBR_RS15565: AZOBR_RS15565 - isopropylmalate isomerase, at 246,309 to 247,715
_RS15565
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.071 kb on - strand, within AZOBR_RS15545 at 244.071 kb on - strand, within AZOBR_RS15545 at 244.071 kb on - strand, within AZOBR_RS15545 at 244.355 kb on + strand at 244.355 kb on + strand at 244.356 kb on - strand at 244.532 kb on + strand at 244.532 kb on + strand at 244.532 kb on + strand at 244.733 kb on + strand at 244.733 kb on + strand at 244.733 kb on + strand at 244.733 kb on + strand at 245.324 kb on + strand, within AZOBR_RS15555 at 245.324 kb on + strand, within AZOBR_RS15555 at 245.325 kb on - strand, within AZOBR_RS15555 at 245.325 kb on - strand, within AZOBR_RS15555 at 245.681 kb on + strand at 245.682 kb on - strand at 246.065 kb on + strand, within AZOBR_RS15560 at 246.066 kb on - strand, within AZOBR_RS15560 at 246.310 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 244,071 - AZOBR_RS15545 0.51 +0.4 244,071 - AZOBR_RS15545 0.51 +0.5 244,071 - AZOBR_RS15545 0.51 +0.4 244,355 + +0.4 244,355 + +0.8 244,356 - +0.9 244,532 + +0.7 244,532 + +0.1 244,532 + +0.6 244,733 + +0.2 244,733 + +0.2 244,733 + +1.0 244,733 + -0.1 245,324 + AZOBR_RS15555 0.60 -1.9 245,324 + AZOBR_RS15555 0.60 +1.5 245,325 - AZOBR_RS15555 0.60 +1.0 245,325 - AZOBR_RS15555 0.60 +0.1 245,681 + +0.9 245,682 - +0.5 246,065 + AZOBR_RS15560 0.59 +0.3 246,066 - AZOBR_RS15560 0.60 +2.0 246,310 + +0.3
Or see this region's nucleotide sequence