Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01750 and AZOBR_RS01755 are separated by 427 nucleotides AZOBR_RS01755 and AZOBR_RS01760 overlap by 4 nucleotides AZOBR_RS01760 and AZOBR_RS01765 overlap by 4 nucleotides
AZOBR_RS01750: AZOBR_RS01750 - uroporphyrinogen decarboxylase, at 356,715 to 357,761
_RS01750
AZOBR_RS01755: AZOBR_RS01755 - hypothetical protein, at 358,189 to 359,037
_RS01755
AZOBR_RS01760: AZOBR_RS01760 - septum formation protein Maf, at 359,034 to 359,642
_RS01760
AZOBR_RS01765: AZOBR_RS01765 - shikimate 5-dehydrogenase, at 359,639 to 360,478
_RS01765
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 357.790 kb on - strand at 357.790 kb on - strand at 357.790 kb on - strand at 357.825 kb on - strand at 357.825 kb on - strand at 357.995 kb on - strand at 357.995 kb on - strand at 358.023 kb on + strand at 358.048 kb on - strand at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.849 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 357,790 - -2.9 357,790 - -0.3 357,790 - -0.1 357,825 - -0.6 357,825 - +0.0 357,995 - -2.4 357,995 - -2.7 358,023 + +2.0 358,048 - -0.0 358,669 + AZOBR_RS01755 0.57 -2.3 358,669 + AZOBR_RS01755 0.57 -3.7 358,669 + AZOBR_RS01755 0.57 -2.5 358,669 + AZOBR_RS01755 0.57 -0.7 358,669 + AZOBR_RS01755 0.57 -1.8 358,849 + AZOBR_RS01755 0.78 -1.1 358,896 + AZOBR_RS01755 0.83 +0.0 358,896 + AZOBR_RS01755 0.83 -0.3 358,896 + AZOBR_RS01755 0.83 -0.6 359,472 + AZOBR_RS01760 0.72 -0.2 359,472 + AZOBR_RS01760 0.72 -0.8 359,472 + AZOBR_RS01760 0.72 -0.1 359,517 + AZOBR_RS01760 0.79 +0.1 359,517 + AZOBR_RS01760 0.79 +3.1
Or see this region's nucleotide sequence