Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21725

Experiment: nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21720 and ABZR86_RS21725 are separated by 21 nucleotidesABZR86_RS21725 and ABZR86_RS21730 are separated by 24 nucleotides ABZR86_RS21720: ABZR86_RS21720 - sterol desaturase family protein, at 315,213 to 316,421 _RS21720 ABZR86_RS21725: ABZR86_RS21725 - YhdP family protein, at 316,443 to 320,309 _RS21725 ABZR86_RS21730: ABZR86_RS21730 - ribonuclease G, at 320,334 to 321,827 _RS21730 Position (kb) 316 317 318 319 320 321Strain fitness (log2 ratio) -2 -1 0 1at 315.539 kb on + strand, within ABZR86_RS21720at 315.539 kb on + strand, within ABZR86_RS21720at 315.540 kb on - strand, within ABZR86_RS21720at 315.624 kb on + strand, within ABZR86_RS21720at 315.625 kb on - strand, within ABZR86_RS21720at 315.625 kb on - strand, within ABZR86_RS21720at 315.705 kb on + strand, within ABZR86_RS21720at 315.705 kb on + strand, within ABZR86_RS21720at 315.705 kb on + strand, within ABZR86_RS21720at 315.705 kb on + strand, within ABZR86_RS21720at 315.706 kb on - strand, within ABZR86_RS21720at 315.922 kb on - strand, within ABZR86_RS21720at 316.071 kb on + strand, within ABZR86_RS21720at 316.071 kb on + strand, within ABZR86_RS21720at 316.071 kb on + strand, within ABZR86_RS21720at 316.071 kb on + strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.072 kb on - strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.107 kb on + strand, within ABZR86_RS21720at 316.108 kb on - strand, within ABZR86_RS21720at 316.108 kb on - strand, within ABZR86_RS21720at 316.108 kb on - strand, within ABZR86_RS21720at 316.108 kb on - strand, within ABZR86_RS21720at 316.108 kb on - strand, within ABZR86_RS21720at 316.108 kb on - strand, within ABZR86_RS21720at 316.108 kb on - strand, within ABZR86_RS21720at 316.180 kb on - strand, within ABZR86_RS21720at 316.180 kb on - strand, within ABZR86_RS21720at 316.189 kb on + strand, within ABZR86_RS21720at 316.248 kb on + strand, within ABZR86_RS21720at 316.248 kb on + strand, within ABZR86_RS21720at 316.249 kb on - strand, within ABZR86_RS21720at 316.249 kb on - strand, within ABZR86_RS21720at 316.260 kb on + strand, within ABZR86_RS21720at 316.261 kb on - strand, within ABZR86_RS21720at 316.275 kb on + strand, within ABZR86_RS21720at 316.275 kb on + strand, within ABZR86_RS21720at 316.275 kb on + strand, within ABZR86_RS21720at 316.275 kb on + strand, within ABZR86_RS21720at 316.275 kb on + strand, within ABZR86_RS21720at 316.276 kb on - strand, within ABZR86_RS21720at 316.276 kb on - strand, within ABZR86_RS21720at 316.276 kb on - strand, within ABZR86_RS21720at 316.276 kb on - strand, within ABZR86_RS21720at 316.276 kb on - strand, within ABZR86_RS21720at 316.276 kb on - strand, within ABZR86_RS21720at 316.276 kb on - strand, within ABZR86_RS21720at 316.323 kb on + strandat 316.323 kb on + strandat 316.324 kb on - strandat 316.324 kb on - strandat 316.324 kb on - strandat 316.341 kb on + strandat 316.341 kb on + strandat 316.341 kb on + strandat 316.342 kb on - strandat 316.342 kb on - strandat 316.342 kb on - strandat 316.342 kb on - strandat 316.342 kb on - strandat 316.557 kb on - strandat 316.580 kb on - strandat 316.580 kb on - strandat 316.726 kb on + strandat 316.726 kb on + strandat 316.727 kb on - strandat 316.727 kb on - strandat 316.760 kb on + strandat 316.760 kb on + strandat 316.761 kb on - strandat 316.761 kb on - strandat 316.761 kb on - strandat 316.938 kb on + strand, within ABZR86_RS21725at 316.939 kb on - strand, within ABZR86_RS21725at 316.939 kb on - strand, within ABZR86_RS21725at 317.228 kb on + strand, within ABZR86_RS21725at 317.228 kb on + strand, within ABZR86_RS21725at 317.229 kb on - strand, within ABZR86_RS21725at 317.425 kb on + strand, within ABZR86_RS21725at 317.425 kb on + strand, within ABZR86_RS21725at 317.426 kb on - strand, within ABZR86_RS21725at 317.426 kb on - strand, within ABZR86_RS21725at 318.168 kb on + strand, within ABZR86_RS21725at 318.168 kb on + strand, within ABZR86_RS21725at 318.168 kb on + strand, within ABZR86_RS21725at 318.169 kb on - strand, within ABZR86_RS21725at 318.169 kb on - strand, within ABZR86_RS21725at 318.169 kb on - strand, within ABZR86_RS21725at 318.473 kb on + strand, within ABZR86_RS21725at 318.835 kb on + strand, within ABZR86_RS21725at 318.835 kb on + strand, within ABZR86_RS21725at 318.835 kb on + strand, within ABZR86_RS21725at 318.835 kb on + strand, within ABZR86_RS21725at 318.835 kb on + strand, within ABZR86_RS21725at 318.835 kb on + strand, within ABZR86_RS21725at 318.836 kb on - strand, within ABZR86_RS21725at 318.836 kb on - strand, within ABZR86_RS21725at 319.014 kb on - strand, within ABZR86_RS21725at 319.362 kb on + strand, within ABZR86_RS21725at 319.363 kb on - strand, within ABZR86_RS21725at 319.559 kb on + strand, within ABZR86_RS21725at 319.580 kb on + strand, within ABZR86_RS21725at 319.580 kb on + strand, within ABZR86_RS21725at 319.580 kb on + strand, within ABZR86_RS21725at 319.580 kb on + strand, within ABZR86_RS21725at 319.581 kb on - strand, within ABZR86_RS21725at 319.581 kb on - strand, within ABZR86_RS21725at 319.581 kb on - strand, within ABZR86_RS21725at 319.583 kb on - strand, within ABZR86_RS21725at 319.783 kb on + strand, within ABZR86_RS21725at 319.783 kb on + strand, within ABZR86_RS21725at 320.069 kb on + strandat 320.335 kb on + strandat 320.336 kb on - strandat 320.336 kb on - strandat 320.336 kb on - strandat 320.336 kb on - strandat 320.368 kb on + strandat 320.369 kb on - strandat 320.369 kb on - strandat 320.391 kb on + strandat 320.391 kb on + strandat 320.391 kb on + strandat 320.391 kb on + strandat 320.391 kb on + strandat 320.391 kb on + strandat 320.392 kb on - strandat 320.392 kb on - strandat 320.392 kb on - strandat 320.478 kb on + strandat 320.479 kb on - strandat 320.479 kb on - strandat 320.540 kb on - strand, within ABZR86_RS21730at 320.540 kb on - strand, within ABZR86_RS21730at 320.671 kb on + strand, within ABZR86_RS21730at 320.672 kb on - strand, within ABZR86_RS21730at 320.672 kb on - strand, within ABZR86_RS21730at 320.753 kb on + strand, within ABZR86_RS21730at 320.842 kb on + strand, within ABZR86_RS21730at 320.842 kb on + strand, within ABZR86_RS21730at 320.842 kb on + strand, within ABZR86_RS21730at 320.843 kb on - strand, within ABZR86_RS21730at 320.843 kb on - strand, within ABZR86_RS21730at 320.843 kb on - strand, within ABZR86_RS21730at 320.876 kb on - strand, within ABZR86_RS21730at 320.932 kb on + strand, within ABZR86_RS21730at 320.933 kb on - strand, within ABZR86_RS21730at 320.995 kb on + strand, within ABZR86_RS21730at 320.996 kb on - strand, within ABZR86_RS21730at 320.996 kb on - strand, within ABZR86_RS21730at 321.025 kb on + strand, within ABZR86_RS21730at 321.089 kb on - strand, within ABZR86_RS21730at 321.089 kb on - strand, within ABZR86_RS21730at 321.089 kb on - strand, within ABZR86_RS21730at 321.176 kb on - strand, within ABZR86_RS21730at 321.176 kb on - strand, within ABZR86_RS21730at 321.176 kb on - strand, within ABZR86_RS21730at 321.176 kb on - strand, within ABZR86_RS21730at 321.241 kb on + strand, within ABZR86_RS21730at 321.241 kb on + strand, within ABZR86_RS21730at 321.241 kb on + strand, within ABZR86_RS21730at 321.242 kb on - strand, within ABZR86_RS21730at 321.242 kb on - strand, within ABZR86_RS21730at 321.242 kb on - strand, within ABZR86_RS21730at 321.242 kb on - strand, within ABZR86_RS21730at 321.301 kb on + strand, within ABZR86_RS21730at 321.302 kb on - strand, within ABZR86_RS21730

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
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315,539 + ABZR86_RS21720 0.27 +0.2
315,539 + ABZR86_RS21720 0.27 -0.0
315,540 - ABZR86_RS21720 0.27 +0.5
315,624 + ABZR86_RS21720 0.34 -0.1
315,625 - ABZR86_RS21720 0.34 -0.3
315,625 - ABZR86_RS21720 0.34 -0.2
315,705 + ABZR86_RS21720 0.41 -0.1
315,705 + ABZR86_RS21720 0.41 -0.2
315,705 + ABZR86_RS21720 0.41 +0.4
315,705 + ABZR86_RS21720 0.41 +0.3
315,706 - ABZR86_RS21720 0.41 +0.6
315,922 - ABZR86_RS21720 0.59 -0.2
316,071 + ABZR86_RS21720 0.71 -0.0
316,071 + ABZR86_RS21720 0.71 +0.3
316,071 + ABZR86_RS21720 0.71 +0.5
316,071 + ABZR86_RS21720 0.71 +0.0
316,072 - ABZR86_RS21720 0.71 +1.1
316,072 - ABZR86_RS21720 0.71 -0.9
316,072 - ABZR86_RS21720 0.71 +0.2
316,072 - ABZR86_RS21720 0.71 -0.3
316,072 - ABZR86_RS21720 0.71 +0.1
316,072 - ABZR86_RS21720 0.71 +0.0
316,072 - ABZR86_RS21720 0.71 +0.4
316,072 - ABZR86_RS21720 0.71 +0.3
316,107 + ABZR86_RS21720 0.74 -0.1
316,107 + ABZR86_RS21720 0.74 +0.1
316,107 + ABZR86_RS21720 0.74 +0.2
316,107 + ABZR86_RS21720 0.74 -0.2
316,107 + ABZR86_RS21720 0.74 +0.2
316,107 + ABZR86_RS21720 0.74 -0.2
316,107 + ABZR86_RS21720 0.74 +1.0
316,107 + ABZR86_RS21720 0.74 -0.1
316,108 - ABZR86_RS21720 0.74 +0.3
316,108 - ABZR86_RS21720 0.74 -0.2
316,108 - ABZR86_RS21720 0.74 -0.1
316,108 - ABZR86_RS21720 0.74 -0.6
316,108 - ABZR86_RS21720 0.74 +0.0
316,108 - ABZR86_RS21720 0.74 +0.2
316,108 - ABZR86_RS21720 0.74 -0.1
316,180 - ABZR86_RS21720 0.80 +0.7
316,180 - ABZR86_RS21720 0.80 +0.3
316,189 + ABZR86_RS21720 0.81 +1.2
316,248 + ABZR86_RS21720 0.86 +0.1
316,248 + ABZR86_RS21720 0.86 +0.1
316,249 - ABZR86_RS21720 0.86 +0.2
316,249 - ABZR86_RS21720 0.86 -0.3
316,260 + ABZR86_RS21720 0.87 -0.9
316,261 - ABZR86_RS21720 0.87 +0.6
316,275 + ABZR86_RS21720 0.88 -0.1
316,275 + ABZR86_RS21720 0.88 -1.3
316,275 + ABZR86_RS21720 0.88 -0.3
316,275 + ABZR86_RS21720 0.88 +0.2
316,275 + ABZR86_RS21720 0.88 +0.5
316,276 - ABZR86_RS21720 0.88 +0.0
316,276 - ABZR86_RS21720 0.88 +0.4
316,276 - ABZR86_RS21720 0.88 +0.1
316,276 - ABZR86_RS21720 0.88 +0.8
316,276 - ABZR86_RS21720 0.88 +0.3
316,276 - ABZR86_RS21720 0.88 +0.5
316,276 - ABZR86_RS21720 0.88 -0.0
316,323 + +0.3
316,323 + -0.1
316,324 - +0.7
316,324 - +0.2
316,324 - +0.1
316,341 + -0.4
316,341 + -0.0
316,341 + +0.4
316,342 - -0.2
316,342 - +0.1
316,342 - -0.2
316,342 - +0.4
316,342 - -0.0
316,557 - -1.5
316,580 - -1.0
316,580 - -0.9
316,726 + -0.8
316,726 + -1.1
316,727 - -1.3
316,727 - -1.2
316,760 + -0.8
316,760 + -0.6
316,761 - -0.2
316,761 - -1.3
316,761 - -0.5
316,938 + ABZR86_RS21725 0.13 -1.6
316,939 - ABZR86_RS21725 0.13 -1.6
316,939 - ABZR86_RS21725 0.13 -2.2
317,228 + ABZR86_RS21725 0.20 -1.1
317,228 + ABZR86_RS21725 0.20 -1.1
317,229 - ABZR86_RS21725 0.20 -0.7
317,425 + ABZR86_RS21725 0.25 -0.7
317,425 + ABZR86_RS21725 0.25 -0.9
317,426 - ABZR86_RS21725 0.25 -1.3
317,426 - ABZR86_RS21725 0.25 -2.4
318,168 + ABZR86_RS21725 0.45 +0.3
318,168 + ABZR86_RS21725 0.45 -1.5
318,168 + ABZR86_RS21725 0.45 -0.7
318,169 - ABZR86_RS21725 0.45 -1.3
318,169 - ABZR86_RS21725 0.45 -1.3
318,169 - ABZR86_RS21725 0.45 -1.2
318,473 + ABZR86_RS21725 0.52 -0.6
318,835 + ABZR86_RS21725 0.62 -0.9
318,835 + ABZR86_RS21725 0.62 -1.6
318,835 + ABZR86_RS21725 0.62 -1.1
318,835 + ABZR86_RS21725 0.62 -1.2
318,835 + ABZR86_RS21725 0.62 +1.1
318,835 + ABZR86_RS21725 0.62 -0.7
318,836 - ABZR86_RS21725 0.62 -0.5
318,836 - ABZR86_RS21725 0.62 -2.0
319,014 - ABZR86_RS21725 0.66 -1.1
319,362 + ABZR86_RS21725 0.75 -0.6
319,363 - ABZR86_RS21725 0.76 -0.8
319,559 + ABZR86_RS21725 0.81 -1.3
319,580 + ABZR86_RS21725 0.81 -1.2
319,580 + ABZR86_RS21725 0.81 -2.0
319,580 + ABZR86_RS21725 0.81 -1.5
319,580 + ABZR86_RS21725 0.81 -0.3
319,581 - ABZR86_RS21725 0.81 -0.7
319,581 - ABZR86_RS21725 0.81 -1.5
319,581 - ABZR86_RS21725 0.81 -1.5
319,583 - ABZR86_RS21725 0.81 -1.0
319,783 + ABZR86_RS21725 0.86 -0.4
319,783 + ABZR86_RS21725 0.86 -2.6
320,069 + -1.7
320,335 + -1.2
320,336 - -0.3
320,336 - -0.1
320,336 - +0.5
320,336 - -0.6
320,368 + -0.5
320,369 - -0.9
320,369 - +0.1
320,391 + -0.1
320,391 + -0.3
320,391 + +0.5
320,391 + -0.9
320,391 + -0.1
320,391 + -0.2
320,392 - -0.5
320,392 - +0.0
320,392 - -0.0
320,478 + +0.3
320,479 - +0.1
320,479 - +0.3
320,540 - ABZR86_RS21730 0.14 -0.2
320,540 - ABZR86_RS21730 0.14 +0.2
320,671 + ABZR86_RS21730 0.23 -0.3
320,672 - ABZR86_RS21730 0.23 +0.6
320,672 - ABZR86_RS21730 0.23 -0.7
320,753 + ABZR86_RS21730 0.28 -0.2
320,842 + ABZR86_RS21730 0.34 -0.5
320,842 + ABZR86_RS21730 0.34 -0.4
320,842 + ABZR86_RS21730 0.34 -0.4
320,843 - ABZR86_RS21730 0.34 -0.2
320,843 - ABZR86_RS21730 0.34 +1.6
320,843 - ABZR86_RS21730 0.34 +0.1
320,876 - ABZR86_RS21730 0.36 -0.2
320,932 + ABZR86_RS21730 0.40 -0.2
320,933 - ABZR86_RS21730 0.40 +1.1
320,995 + ABZR86_RS21730 0.44 -0.5
320,996 - ABZR86_RS21730 0.44 +0.3
320,996 - ABZR86_RS21730 0.44 -0.4
321,025 + ABZR86_RS21730 0.46 -1.4
321,089 - ABZR86_RS21730 0.51 -0.5
321,089 - ABZR86_RS21730 0.51 -0.4
321,089 - ABZR86_RS21730 0.51 -1.3
321,176 - ABZR86_RS21730 0.56 +0.3
321,176 - ABZR86_RS21730 0.56 -1.0
321,176 - ABZR86_RS21730 0.56 +0.7
321,176 - ABZR86_RS21730 0.56 +0.0
321,241 + ABZR86_RS21730 0.61 +0.4
321,241 + ABZR86_RS21730 0.61 -0.2
321,241 + ABZR86_RS21730 0.61 -0.4
321,242 - ABZR86_RS21730 0.61 +1.2
321,242 - ABZR86_RS21730 0.61 +0.5
321,242 - ABZR86_RS21730 0.61 +0.4
321,242 - ABZR86_RS21730 0.61 +0.1
321,301 + ABZR86_RS21730 0.65 +0.1
321,302 - ABZR86_RS21730 0.65 +0.5

Or see this region's nucleotide sequence