Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21345

Experiment: nitrate 150 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS21340 and ABZR86_RS21345 are separated by 229 nucleotidesABZR86_RS21345 and ABZR86_RS21350 overlap by 4 nucleotidesABZR86_RS21350 and ABZR86_RS21355 are separated by 81 nucleotides ABZR86_RS21340: ABZR86_RS21340 - sensor histidine kinase, at 234,892 to 236,121 _RS21340 ABZR86_RS21345: ABZR86_RS21345 - GNAT family N-acetyltransferase, at 236,351 to 236,968 _RS21345 ABZR86_RS21350: ABZR86_RS21350 - septum site-determining protein MinC, at 236,965 to 237,747 _RS21350 ABZR86_RS21355: ABZR86_RS21355 - septum site-determining protein MinD, at 237,829 to 238,644 _RS21355 Position (kb) 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 235.632 kb on - strand, within ABZR86_RS21340at 235.632 kb on - strand, within ABZR86_RS21340at 235.632 kb on - strand, within ABZR86_RS21340at 235.632 kb on - strand, within ABZR86_RS21340at 235.655 kb on + strand, within ABZR86_RS21340at 235.655 kb on + strand, within ABZR86_RS21340at 235.656 kb on - strand, within ABZR86_RS21340at 235.700 kb on + strand, within ABZR86_RS21340at 235.700 kb on + strand, within ABZR86_RS21340at 235.700 kb on + strand, within ABZR86_RS21340at 235.700 kb on + strand, within ABZR86_RS21340at 235.701 kb on - strand, within ABZR86_RS21340at 235.943 kb on + strand, within ABZR86_RS21340at 235.943 kb on + strand, within ABZR86_RS21340at 235.943 kb on + strand, within ABZR86_RS21340at 235.943 kb on + strand, within ABZR86_RS21340at 235.943 kb on + strand, within ABZR86_RS21340at 235.943 kb on + strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.944 kb on - strand, within ABZR86_RS21340at 235.964 kb on + strand, within ABZR86_RS21340at 235.986 kb on + strand, within ABZR86_RS21340at 235.986 kb on + strand, within ABZR86_RS21340at 235.987 kb on - strand, within ABZR86_RS21340at 236.063 kb on + strandat 236.063 kb on + strandat 236.063 kb on + strandat 236.063 kb on + strandat 236.063 kb on + strandat 236.063 kb on + strandat 236.063 kb on + strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.064 kb on - strandat 236.211 kb on + strandat 236.212 kb on - strandat 236.222 kb on + strandat 236.223 kb on - strandat 236.223 kb on - strandat 236.239 kb on + strandat 236.239 kb on + strandat 236.239 kb on + strandat 236.239 kb on + strandat 236.239 kb on + strandat 236.240 kb on - strandat 236.240 kb on - strandat 236.240 kb on - strandat 236.265 kb on + strandat 236.265 kb on + strandat 236.265 kb on + strandat 236.265 kb on + strandat 236.266 kb on - strandat 236.266 kb on - strandat 236.335 kb on + strandat 236.335 kb on + strandat 236.335 kb on + strandat 236.335 kb on + strandat 236.336 kb on + strandat 236.336 kb on - strandat 236.336 kb on - strandat 236.336 kb on - strandat 236.336 kb on - strandat 236.459 kb on + strand, within ABZR86_RS21345at 236.459 kb on + strand, within ABZR86_RS21345at 236.460 kb on - strand, within ABZR86_RS21345at 236.460 kb on - strand, within ABZR86_RS21345at 236.465 kb on + strand, within ABZR86_RS21345at 236.465 kb on + strand, within ABZR86_RS21345at 236.465 kb on + strand, within ABZR86_RS21345at 236.466 kb on - strand, within ABZR86_RS21345at 236.564 kb on + strand, within ABZR86_RS21345at 236.564 kb on + strand, within ABZR86_RS21345at 236.564 kb on + strand, within ABZR86_RS21345at 236.564 kb on + strand, within ABZR86_RS21345at 236.565 kb on - strand, within ABZR86_RS21345at 236.565 kb on - strand, within ABZR86_RS21345at 236.565 kb on - strand, within ABZR86_RS21345at 236.585 kb on + strand, within ABZR86_RS21345at 236.585 kb on + strand, within ABZR86_RS21345at 236.585 kb on + strand, within ABZR86_RS21345at 236.586 kb on - strand, within ABZR86_RS21345at 236.600 kb on + strand, within ABZR86_RS21345at 236.600 kb on + strand, within ABZR86_RS21345at 236.600 kb on + strand, within ABZR86_RS21345at 236.601 kb on - strand, within ABZR86_RS21345at 236.660 kb on + strand, within ABZR86_RS21345at 236.660 kb on + strand, within ABZR86_RS21345at 236.660 kb on + strand, within ABZR86_RS21345at 236.660 kb on + strand, within ABZR86_RS21345at 236.661 kb on - strand, within ABZR86_RS21345at 236.661 kb on - strand, within ABZR86_RS21345at 236.661 kb on - strand, within ABZR86_RS21345at 236.678 kb on + strand, within ABZR86_RS21345at 236.679 kb on - strand, within ABZR86_RS21345at 236.679 kb on - strand, within ABZR86_RS21345at 236.679 kb on - strand, within ABZR86_RS21345at 236.679 kb on - strand, within ABZR86_RS21345at 236.762 kb on + strand, within ABZR86_RS21345at 236.762 kb on + strand, within ABZR86_RS21345at 236.763 kb on - strand, within ABZR86_RS21345at 236.843 kb on + strand, within ABZR86_RS21345at 236.844 kb on - strand, within ABZR86_RS21345at 236.844 kb on - strand, within ABZR86_RS21345at 236.849 kb on + strand, within ABZR86_RS21345at 236.850 kb on - strand, within ABZR86_RS21345at 236.850 kb on - strand, within ABZR86_RS21345at 236.850 kb on - strand, within ABZR86_RS21345at 236.850 kb on - strand, within ABZR86_RS21345at 236.850 kb on - strand, within ABZR86_RS21345at 236.850 kb on - strand, within ABZR86_RS21345at 236.864 kb on + strand, within ABZR86_RS21345at 236.864 kb on + strand, within ABZR86_RS21345at 236.864 kb on + strand, within ABZR86_RS21345at 236.864 kb on + strand, within ABZR86_RS21345at 236.864 kb on + strand, within ABZR86_RS21345at 236.865 kb on - strand, within ABZR86_RS21345at 236.926 kb on + strandat 236.926 kb on + strandat 236.982 kb on + strandat 236.983 kb on - strandat 237.065 kb on - strand, within ABZR86_RS21350at 237.469 kb on + strand, within ABZR86_RS21350at 237.469 kb on + strand, within ABZR86_RS21350at 237.469 kb on + strand, within ABZR86_RS21350at 237.469 kb on + strand, within ABZR86_RS21350at 237.550 kb on + strand, within ABZR86_RS21350at 237.551 kb on - strand, within ABZR86_RS21350at 237.551 kb on - strand, within ABZR86_RS21350at 237.610 kb on + strand, within ABZR86_RS21350at 237.610 kb on + strand, within ABZR86_RS21350at 237.610 kb on + strand, within ABZR86_RS21350at 237.610 kb on + strand, within ABZR86_RS21350at 237.611 kb on - strand, within ABZR86_RS21350at 237.611 kb on - strand, within ABZR86_RS21350at 237.611 kb on - strand, within ABZR86_RS21350at 237.611 kb on - strand, within ABZR86_RS21350at 237.611 kb on - strand, within ABZR86_RS21350at 237.611 kb on - strand, within ABZR86_RS21350at 237.781 kb on + strandat 237.781 kb on + strandat 237.782 kb on - strandat 237.782 kb on - strandat 237.784 kb on + strandat 237.799 kb on + strandat 237.799 kb on + strandat 237.800 kb on - strandat 237.810 kb on + strandat 237.810 kb on + strandat 237.810 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
remove
235,632 - ABZR86_RS21340 0.60 -0.5
235,632 - ABZR86_RS21340 0.60 -0.2
235,632 - ABZR86_RS21340 0.60 -1.0
235,632 - ABZR86_RS21340 0.60 -0.7
235,655 + ABZR86_RS21340 0.62 -1.6
235,655 + ABZR86_RS21340 0.62 -0.9
235,656 - ABZR86_RS21340 0.62 -0.5
235,700 + ABZR86_RS21340 0.66 -0.7
235,700 + ABZR86_RS21340 0.66 -0.1
235,700 + ABZR86_RS21340 0.66 -0.8
235,700 + ABZR86_RS21340 0.66 -0.7
235,701 - ABZR86_RS21340 0.66 -0.8
235,943 + ABZR86_RS21340 0.85 -1.0
235,943 + ABZR86_RS21340 0.85 -0.7
235,943 + ABZR86_RS21340 0.85 -0.8
235,943 + ABZR86_RS21340 0.85 -1.1
235,943 + ABZR86_RS21340 0.85 -0.9
235,943 + ABZR86_RS21340 0.85 -1.0
235,944 - ABZR86_RS21340 0.86 -1.8
235,944 - ABZR86_RS21340 0.86 +0.3
235,944 - ABZR86_RS21340 0.86 -0.4
235,944 - ABZR86_RS21340 0.86 -0.2
235,944 - ABZR86_RS21340 0.86 -0.3
235,944 - ABZR86_RS21340 0.86 -0.5
235,944 - ABZR86_RS21340 0.86 -0.7
235,944 - ABZR86_RS21340 0.86 -0.3
235,964 + ABZR86_RS21340 0.87 -1.0
235,986 + ABZR86_RS21340 0.89 -1.2
235,986 + ABZR86_RS21340 0.89 -1.4
235,987 - ABZR86_RS21340 0.89 -0.4
236,063 + -0.2
236,063 + -1.7
236,063 + -1.0
236,063 + -1.1
236,063 + -0.4
236,063 + -0.6
236,063 + -0.6
236,064 - -1.0
236,064 - -0.7
236,064 - -0.8
236,064 - -0.5
236,064 - -1.0
236,064 - +0.2
236,064 - -0.6
236,064 - -0.2
236,064 - -0.7
236,064 - -0.6
236,064 - -1.0
236,064 - -0.2
236,064 - -0.6
236,064 - -0.1
236,064 - -0.8
236,064 - -0.6
236,211 + -0.3
236,212 - +0.5
236,222 + -0.2
236,223 - +0.3
236,223 - +0.1
236,239 + +0.3
236,239 + -0.5
236,239 + -0.1
236,239 + +1.4
236,239 + +0.1
236,240 - -0.6
236,240 - -0.0
236,240 - -0.2
236,265 + +0.2
236,265 + -0.2
236,265 + -0.7
236,265 + +0.1
236,266 - -1.5
236,266 - -1.2
236,335 + -0.3
236,335 + -0.9
236,335 + -0.6
236,335 + -0.3
236,336 + +0.1
236,336 - -2.3
236,336 - -3.7
236,336 - -1.8
236,336 - -1.3
236,459 + ABZR86_RS21345 0.17 -1.6
236,459 + ABZR86_RS21345 0.17 -1.0
236,460 - ABZR86_RS21345 0.18 -2.1
236,460 - ABZR86_RS21345 0.18 -1.8
236,465 + ABZR86_RS21345 0.18 -1.3
236,465 + ABZR86_RS21345 0.18 -0.3
236,465 + ABZR86_RS21345 0.18 -1.3
236,466 - ABZR86_RS21345 0.19 -0.1
236,564 + ABZR86_RS21345 0.34 -0.6
236,564 + ABZR86_RS21345 0.34 -0.8
236,564 + ABZR86_RS21345 0.34 -1.8
236,564 + ABZR86_RS21345 0.34 +0.2
236,565 - ABZR86_RS21345 0.35 -3.3
236,565 - ABZR86_RS21345 0.35 -2.8
236,565 - ABZR86_RS21345 0.35 -1.4
236,585 + ABZR86_RS21345 0.38 -0.9
236,585 + ABZR86_RS21345 0.38 -3.0
236,585 + ABZR86_RS21345 0.38 +0.7
236,586 - ABZR86_RS21345 0.38 -1.6
236,600 + ABZR86_RS21345 0.40 -0.3
236,600 + ABZR86_RS21345 0.40 -0.8
236,600 + ABZR86_RS21345 0.40 -1.3
236,601 - ABZR86_RS21345 0.40 -2.8
236,660 + ABZR86_RS21345 0.50 -0.9
236,660 + ABZR86_RS21345 0.50 -1.3
236,660 + ABZR86_RS21345 0.50 -0.8
236,660 + ABZR86_RS21345 0.50 -0.9
236,661 - ABZR86_RS21345 0.50 -2.1
236,661 - ABZR86_RS21345 0.50 -1.6
236,661 - ABZR86_RS21345 0.50 -1.5
236,678 + ABZR86_RS21345 0.53 +0.0
236,679 - ABZR86_RS21345 0.53 -1.5
236,679 - ABZR86_RS21345 0.53 -1.8
236,679 - ABZR86_RS21345 0.53 -1.6
236,679 - ABZR86_RS21345 0.53 -1.4
236,762 + ABZR86_RS21345 0.67 -1.4
236,762 + ABZR86_RS21345 0.67 -1.4
236,763 - ABZR86_RS21345 0.67 -1.1
236,843 + ABZR86_RS21345 0.80 -0.6
236,844 - ABZR86_RS21345 0.80 -1.2
236,844 - ABZR86_RS21345 0.80 -1.3
236,849 + ABZR86_RS21345 0.81 -1.5
236,850 - ABZR86_RS21345 0.81 -1.7
236,850 - ABZR86_RS21345 0.81 -2.3
236,850 - ABZR86_RS21345 0.81 -2.6
236,850 - ABZR86_RS21345 0.81 -0.8
236,850 - ABZR86_RS21345 0.81 -1.0
236,850 - ABZR86_RS21345 0.81 -0.6
236,864 + ABZR86_RS21345 0.83 -0.7
236,864 + ABZR86_RS21345 0.83 -1.1
236,864 + ABZR86_RS21345 0.83 -0.7
236,864 + ABZR86_RS21345 0.83 -1.2
236,864 + ABZR86_RS21345 0.83 -2.0
236,865 - ABZR86_RS21345 0.83 -3.9
236,926 + +0.5
236,926 + -0.4
236,982 + -1.2
236,983 - -0.4
237,065 - ABZR86_RS21350 0.13 -0.5
237,469 + ABZR86_RS21350 0.64 -1.2
237,469 + ABZR86_RS21350 0.64 +0.6
237,469 + ABZR86_RS21350 0.64 -1.1
237,469 + ABZR86_RS21350 0.64 -0.6
237,550 + ABZR86_RS21350 0.75 +2.0
237,551 - ABZR86_RS21350 0.75 -0.8
237,551 - ABZR86_RS21350 0.75 -0.4
237,610 + ABZR86_RS21350 0.82 -0.1
237,610 + ABZR86_RS21350 0.82 +0.1
237,610 + ABZR86_RS21350 0.82 +0.1
237,610 + ABZR86_RS21350 0.82 -1.1
237,611 - ABZR86_RS21350 0.83 -1.8
237,611 - ABZR86_RS21350 0.83 -1.8
237,611 - ABZR86_RS21350 0.83 -0.6
237,611 - ABZR86_RS21350 0.83 -1.3
237,611 - ABZR86_RS21350 0.83 -1.3
237,611 - ABZR86_RS21350 0.83 +1.2
237,781 + -0.4
237,781 + -0.5
237,782 - -0.1
237,782 - -1.7
237,784 + -0.4
237,799 + +0.0
237,799 + -0.0
237,800 - -1.1
237,810 + -0.1
237,810 + -0.5
237,810 + -0.3

Or see this region's nucleotide sequence