Experiment: nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21330 and ABZR86_RS21335 are separated by 235 nucleotides ABZR86_RS21335 and ABZR86_RS21340 are separated by 121 nucleotides
ABZR86_RS21330: ABZR86_RS21330 - polyketide cyclase, at 232,541 to 233,893
_RS21330
ABZR86_RS21335: ABZR86_RS21335 - response regulator transcription factor, at 234,129 to 234,770
_RS21335
ABZR86_RS21340: ABZR86_RS21340 - sensor histidine kinase, at 234,892 to 236,121
_RS21340
Position (kb) 234
235 Strain fitness (log2 ratio) -2
-1
0
1 at 233.289 kb on + strand, within ABZR86_RS21330 at 233.289 kb on + strand, within ABZR86_RS21330 at 233.289 kb on + strand, within ABZR86_RS21330 at 233.290 kb on - strand, within ABZR86_RS21330 at 233.391 kb on + strand, within ABZR86_RS21330 at 233.391 kb on + strand, within ABZR86_RS21330 at 233.391 kb on + strand, within ABZR86_RS21330 at 233.391 kb on + strand, within ABZR86_RS21330 at 233.391 kb on + strand, within ABZR86_RS21330 at 233.391 kb on + strand, within ABZR86_RS21330 at 233.391 kb on + strand, within ABZR86_RS21330 at 233.392 kb on - strand, within ABZR86_RS21330 at 233.392 kb on - strand, within ABZR86_RS21330 at 233.392 kb on - strand, within ABZR86_RS21330 at 233.392 kb on - strand, within ABZR86_RS21330 at 233.392 kb on - strand, within ABZR86_RS21330 at 233.427 kb on + strand, within ABZR86_RS21330 at 233.428 kb on - strand, within ABZR86_RS21330 at 233.439 kb on + strand, within ABZR86_RS21330 at 233.439 kb on + strand, within ABZR86_RS21330 at 233.439 kb on + strand, within ABZR86_RS21330 at 233.440 kb on - strand, within ABZR86_RS21330 at 233.440 kb on - strand, within ABZR86_RS21330 at 233.440 kb on - strand, within ABZR86_RS21330 at 233.440 kb on - strand, within ABZR86_RS21330 at 233.440 kb on - strand, within ABZR86_RS21330 at 233.667 kb on + strand, within ABZR86_RS21330 at 233.668 kb on - strand, within ABZR86_RS21330 at 233.760 kb on + strand at 233.761 kb on - strand at 233.861 kb on + strand at 233.862 kb on - strand at 233.970 kb on + strand at 233.971 kb on - strand at 234.130 kb on + strand at 234.131 kb on - strand at 234.131 kb on - strand at 234.469 kb on + strand, within ABZR86_RS21335 at 234.825 kb on + strand at 234.825 kb on + strand at 234.825 kb on + strand at 234.826 kb on - strand at 234.826 kb on - strand at 234.826 kb on - strand at 235.133 kb on + strand, within ABZR86_RS21340 at 235.133 kb on + strand, within ABZR86_RS21340 at 235.133 kb on + strand, within ABZR86_RS21340 at 235.179 kb on + strand, within ABZR86_RS21340 at 235.632 kb on - strand, within ABZR86_RS21340 at 235.632 kb on - strand, within ABZR86_RS21340 at 235.632 kb on - strand, within ABZR86_RS21340 at 235.632 kb on - strand, within ABZR86_RS21340 at 235.655 kb on + strand, within ABZR86_RS21340 at 235.655 kb on + strand, within ABZR86_RS21340 at 235.656 kb on - strand, within ABZR86_RS21340 at 235.700 kb on + strand, within ABZR86_RS21340 at 235.700 kb on + strand, within ABZR86_RS21340 at 235.700 kb on + strand, within ABZR86_RS21340 at 235.700 kb on + strand, within ABZR86_RS21340 at 235.701 kb on - strand, within ABZR86_RS21340
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 150 mM remove 233,289 + ABZR86_RS21330 0.55 +0.2 233,289 + ABZR86_RS21330 0.55 -0.2 233,289 + ABZR86_RS21330 0.55 +1.4 233,290 - ABZR86_RS21330 0.55 -0.2 233,391 + ABZR86_RS21330 0.63 -0.3 233,391 + ABZR86_RS21330 0.63 -0.2 233,391 + ABZR86_RS21330 0.63 +0.3 233,391 + ABZR86_RS21330 0.63 +0.3 233,391 + ABZR86_RS21330 0.63 -0.8 233,391 + ABZR86_RS21330 0.63 -0.5 233,391 + ABZR86_RS21330 0.63 +0.2 233,392 - ABZR86_RS21330 0.63 -0.5 233,392 - ABZR86_RS21330 0.63 +0.1 233,392 - ABZR86_RS21330 0.63 -0.8 233,392 - ABZR86_RS21330 0.63 +0.4 233,392 - ABZR86_RS21330 0.63 +0.1 233,427 + ABZR86_RS21330 0.65 -0.8 233,428 - ABZR86_RS21330 0.66 +0.5 233,439 + ABZR86_RS21330 0.66 +0.7 233,439 + ABZR86_RS21330 0.66 -2.2 233,439 + ABZR86_RS21330 0.66 -0.2 233,440 - ABZR86_RS21330 0.66 +0.1 233,440 - ABZR86_RS21330 0.66 -0.7 233,440 - ABZR86_RS21330 0.66 +0.3 233,440 - ABZR86_RS21330 0.66 +0.1 233,440 - ABZR86_RS21330 0.66 +0.1 233,667 + ABZR86_RS21330 0.83 +0.2 233,668 - ABZR86_RS21330 0.83 +1.0 233,760 + +0.2 233,761 - -0.8 233,861 + -0.3 233,862 - -0.3 233,970 + +0.0 233,971 - +0.2 234,130 + -1.5 234,131 - +0.2 234,131 - +0.3 234,469 + ABZR86_RS21335 0.53 -1.1 234,825 + -1.3 234,825 + +0.0 234,825 + -0.4 234,826 - +0.2 234,826 - +0.3 234,826 - -0.2 235,133 + ABZR86_RS21340 0.20 +1.1 235,133 + ABZR86_RS21340 0.20 -0.5 235,133 + ABZR86_RS21340 0.20 -1.1 235,179 + ABZR86_RS21340 0.23 -0.9 235,632 - ABZR86_RS21340 0.60 -0.5 235,632 - ABZR86_RS21340 0.60 -0.2 235,632 - ABZR86_RS21340 0.60 -1.0 235,632 - ABZR86_RS21340 0.60 -0.7 235,655 + ABZR86_RS21340 0.62 -1.6 235,655 + ABZR86_RS21340 0.62 -0.9 235,656 - ABZR86_RS21340 0.62 -0.5 235,700 + ABZR86_RS21340 0.66 -0.7 235,700 + ABZR86_RS21340 0.66 -0.1 235,700 + ABZR86_RS21340 0.66 -0.8 235,700 + ABZR86_RS21340 0.66 -0.7 235,701 - ABZR86_RS21340 0.66 -0.8
Or see this region's nucleotide sequence