Experiment: nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20185 and ABZR86_RS20190 overlap by 4 nucleotides ABZR86_RS20190 and ABZR86_RS20195 are separated by 14 nucleotides
ABZR86_RS20185: ABZR86_RS20185 - flagellar protein export ATPase FliI, at 531,463 to 532,821
_RS20185
ABZR86_RS20190: ABZR86_RS20190 - flagellar export protein FliJ, at 532,818 to 533,252
_RS20190
ABZR86_RS20195: ABZR86_RS20195 - flagellar hook-length control protein FliK, at 533,267 to 534,307
_RS20195
Position (kb) 532
533
534 Strain fitness (log2 ratio) -1
0
1 at 532.034 kb on - strand, within ABZR86_RS20185 at 532.270 kb on + strand, within ABZR86_RS20185 at 532.417 kb on + strand, within ABZR86_RS20185 at 532.417 kb on + strand, within ABZR86_RS20185 at 532.418 kb on - strand, within ABZR86_RS20185 at 532.418 kb on - strand, within ABZR86_RS20185 at 532.418 kb on - strand, within ABZR86_RS20185 at 532.418 kb on - strand, within ABZR86_RS20185 at 532.419 kb on + strand, within ABZR86_RS20185 at 532.419 kb on + strand, within ABZR86_RS20185 at 532.420 kb on - strand, within ABZR86_RS20185 at 532.420 kb on - strand, within ABZR86_RS20185 at 532.420 kb on - strand, within ABZR86_RS20185 at 532.420 kb on - strand, within ABZR86_RS20185 at 532.495 kb on - strand, within ABZR86_RS20185 at 533.034 kb on - strand, within ABZR86_RS20190 at 533.034 kb on - strand, within ABZR86_RS20190 at 533.251 kb on - strand at 533.280 kb on + strand at 533.280 kb on + strand at 533.280 kb on + strand at 533.281 kb on - strand at 533.281 kb on - strand at 533.281 kb on - strand at 533.824 kb on + strand, within ABZR86_RS20195
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 150 mM remove 532,034 - ABZR86_RS20185 0.42 -0.2 532,270 + ABZR86_RS20185 0.59 +0.7 532,417 + ABZR86_RS20185 0.70 -0.0 532,417 + ABZR86_RS20185 0.70 +0.0 532,418 - ABZR86_RS20185 0.70 -0.2 532,418 - ABZR86_RS20185 0.70 +0.5 532,418 - ABZR86_RS20185 0.70 +0.2 532,418 - ABZR86_RS20185 0.70 -0.4 532,419 + ABZR86_RS20185 0.70 -0.0 532,419 + ABZR86_RS20185 0.70 -0.2 532,420 - ABZR86_RS20185 0.70 -0.1 532,420 - ABZR86_RS20185 0.70 -0.8 532,420 - ABZR86_RS20185 0.70 -0.3 532,420 - ABZR86_RS20185 0.70 +0.3 532,495 - ABZR86_RS20185 0.76 +0.1 533,034 - ABZR86_RS20190 0.50 -0.5 533,034 - ABZR86_RS20190 0.50 -1.1 533,251 - -1.0 533,280 + -0.1 533,280 + -0.6 533,280 + -0.1 533,281 - -0.7 533,281 - +0.2 533,281 - +0.5 533,824 + ABZR86_RS20195 0.54 -0.2
Or see this region's nucleotide sequence