Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18490

Experiment: nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18485 and ABZR86_RS18490 are separated by 283 nucleotidesABZR86_RS18490 and ABZR86_RS18495 overlap by 4 nucleotides ABZR86_RS18485: ABZR86_RS18485 - fumarylacetoacetate hydrolase family protein, at 117,640 to 118,626 _RS18485 ABZR86_RS18490: ABZR86_RS18490 - low molecular weight protein-tyrosine-phosphatase, at 118,910 to 119,374 _RS18490 ABZR86_RS18495: ABZR86_RS18495 - polysaccharide biosynthesis tyrosine autokinase, at 119,371 to 121,572 _RS18495 Position (kb) 118 119 120Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 118.628 kb on - strandat 118.628 kb on - strandat 118.628 kb on - strandat 118.658 kb on + strandat 118.658 kb on + strandat 118.659 kb on - strandat 118.659 kb on - strandat 118.711 kb on - strandat 118.711 kb on - strandat 118.785 kb on - strandat 118.798 kb on - strandat 118.800 kb on + strandat 118.801 kb on - strandat 118.801 kb on - strandat 118.824 kb on + strandat 118.825 kb on - strandat 118.921 kb on + strandat 118.971 kb on - strand, within ABZR86_RS18490at 119.010 kb on + strand, within ABZR86_RS18490at 119.010 kb on + strand, within ABZR86_RS18490at 119.011 kb on - strand, within ABZR86_RS18490at 119.298 kb on - strand, within ABZR86_RS18490at 119.336 kb on + strandat 119.337 kb on - strandat 119.527 kb on + strandat 119.527 kb on + strandat 119.694 kb on + strand, within ABZR86_RS18495at 119.904 kb on + strand, within ABZR86_RS18495at 119.904 kb on + strand, within ABZR86_RS18495at 119.905 kb on - strand, within ABZR86_RS18495at 119.905 kb on - strand, within ABZR86_RS18495at 119.905 kb on - strand, within ABZR86_RS18495at 119.905 kb on - strand, within ABZR86_RS18495at 120.122 kb on - strand, within ABZR86_RS18495at 120.178 kb on + strand, within ABZR86_RS18495at 120.178 kb on + strand, within ABZR86_RS18495at 120.178 kb on + strand, within ABZR86_RS18495at 120.178 kb on + strand, within ABZR86_RS18495at 120.178 kb on + strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495at 120.179 kb on - strand, within ABZR86_RS18495

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
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118,628 - -0.2
118,628 - -0.2
118,628 - +0.6
118,658 + +0.3
118,658 + +0.2
118,659 - +0.3
118,659 - +0.3
118,711 - +0.2
118,711 - +0.3
118,785 - -1.2
118,798 - +0.3
118,800 + +0.4
118,801 - -1.1
118,801 - -2.4
118,824 + -0.5
118,825 - -2.1
118,921 + -0.5
118,971 - ABZR86_RS18490 0.13 -3.8
119,010 + ABZR86_RS18490 0.22 -3.1
119,010 + ABZR86_RS18490 0.22 -3.0
119,011 - ABZR86_RS18490 0.22 -4.8
119,298 - ABZR86_RS18490 0.83 -0.6
119,336 + -1.4
119,337 - -2.0
119,527 + -3.6
119,527 + -4.3
119,694 + ABZR86_RS18495 0.15 -2.7
119,904 + ABZR86_RS18495 0.24 -2.9
119,904 + ABZR86_RS18495 0.24 -2.6
119,905 - ABZR86_RS18495 0.24 -2.2
119,905 - ABZR86_RS18495 0.24 -1.3
119,905 - ABZR86_RS18495 0.24 -3.4
119,905 - ABZR86_RS18495 0.24 -5.1
120,122 - ABZR86_RS18495 0.34 -2.5
120,178 + ABZR86_RS18495 0.37 -3.7
120,178 + ABZR86_RS18495 0.37 -2.6
120,178 + ABZR86_RS18495 0.37 -3.3
120,178 + ABZR86_RS18495 0.37 -3.7
120,178 + ABZR86_RS18495 0.37 -1.5
120,179 - ABZR86_RS18495 0.37 -3.1
120,179 - ABZR86_RS18495 0.37 -2.5
120,179 - ABZR86_RS18495 0.37 -2.3
120,179 - ABZR86_RS18495 0.37 -2.9
120,179 - ABZR86_RS18495 0.37 -2.0
120,179 - ABZR86_RS18495 0.37 -3.4
120,179 - ABZR86_RS18495 0.37 -2.6
120,179 - ABZR86_RS18495 0.37 -0.9

Or see this region's nucleotide sequence