Experiment: nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS10820 and ABZR86_RS10825 are separated by 24 nucleotides ABZR86_RS10825 and ABZR86_RS10830 overlap by 8 nucleotides ABZR86_RS10830 and ABZR86_RS10835 are separated by 164 nucleotides
ABZR86_RS10820: ABZR86_RS10820 - protein TolQ, at 2,401,988 to 2,402,674
_RS10820
ABZR86_RS10825: ABZR86_RS10825 - tol-pal system-associated acyl-CoA thioesterase, at 2,402,699 to 2,403,133
_RS10825
ABZR86_RS10830: ABZR86_RS10830 - Holliday junction branch migration DNA helicase RuvB, at 2,403,126 to 2,404,172
_RS10830
ABZR86_RS10835: ABZR86_RS10835 - potassium transporter Kup, at 2,404,337 to 2,406,238
_RS10835
Position (kb)
2403
2404
2405 Strain fitness (log2 ratio)
-2
-1
0
1 at 2402.700 kb on + strand at 2402.701 kb on - strand at 2402.714 kb on + strand at 2402.876 kb on + strand, within ABZR86_RS10825 at 2403.030 kb on + strand, within ABZR86_RS10825 at 2403.042 kb on + strand, within ABZR86_RS10825 at 2403.043 kb on - strand, within ABZR86_RS10825 at 2403.075 kb on + strand, within ABZR86_RS10825 at 2403.076 kb on - strand, within ABZR86_RS10825 at 2403.076 kb on - strand, within ABZR86_RS10825 at 2403.478 kb on + strand, within ABZR86_RS10830 at 2403.479 kb on - strand, within ABZR86_RS10830 at 2403.625 kb on + strand, within ABZR86_RS10830 at 2404.045 kb on + strand, within ABZR86_RS10830 at 2404.183 kb on + strand at 2404.183 kb on + strand at 2404.226 kb on - strand at 2404.234 kb on + strand at 2404.234 kb on + strand at 2404.234 kb on + strand at 2404.234 kb on + strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.317 kb on + strand at 2404.317 kb on + strand at 2404.317 kb on + strand at 2404.318 kb on - strand at 2404.318 kb on - strand at 2404.318 kb on - strand at 2404.325 kb on - strand at 2404.609 kb on - strand, within ABZR86_RS10835
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 150 mM remove 2,402,700 + -2.3 2,402,701 - +0.2 2,402,714 + +0.2 2,402,876 + ABZR86_RS10825 0.41 -0.6 2,403,030 + ABZR86_RS10825 0.76 -0.1 2,403,042 + ABZR86_RS10825 0.79 +0.2 2,403,043 - ABZR86_RS10825 0.79 -0.3 2,403,075 + ABZR86_RS10825 0.86 -0.1 2,403,076 - ABZR86_RS10825 0.87 -0.3 2,403,076 - ABZR86_RS10825 0.87 -2.0 2,403,478 + ABZR86_RS10830 0.34 -1.3 2,403,479 - ABZR86_RS10830 0.34 -1.2 2,403,625 + ABZR86_RS10830 0.48 -0.7 2,404,045 + ABZR86_RS10830 0.88 -1.5 2,404,183 + -1.0 2,404,183 + -1.0 2,404,226 - -0.9 2,404,234 + -0.1 2,404,234 + -0.0 2,404,234 + +0.3 2,404,234 + +0.4 2,404,235 - +0.5 2,404,235 - +0.3 2,404,235 - +0.1 2,404,235 - +0.2 2,404,235 - +0.2 2,404,317 + +0.0 2,404,317 + +0.1 2,404,317 + +0.2 2,404,318 - +0.2 2,404,318 - -0.5 2,404,318 - -0.6 2,404,325 - +0.5 2,404,609 - ABZR86_RS10835 0.14 -0.6
Or see this region's nucleotide sequence