Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10830

Experiment: nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10820 and ABZR86_RS10825 are separated by 24 nucleotidesABZR86_RS10825 and ABZR86_RS10830 overlap by 8 nucleotidesABZR86_RS10830 and ABZR86_RS10835 are separated by 164 nucleotides ABZR86_RS10820: ABZR86_RS10820 - protein TolQ, at 2,401,988 to 2,402,674 _RS10820 ABZR86_RS10825: ABZR86_RS10825 - tol-pal system-associated acyl-CoA thioesterase, at 2,402,699 to 2,403,133 _RS10825 ABZR86_RS10830: ABZR86_RS10830 - Holliday junction branch migration DNA helicase RuvB, at 2,403,126 to 2,404,172 _RS10830 ABZR86_RS10835: ABZR86_RS10835 - potassium transporter Kup, at 2,404,337 to 2,406,238 _RS10835 Position (kb) 2403 2404 2405Strain fitness (log2 ratio) -2 -1 0 1at 2402.700 kb on + strandat 2402.701 kb on - strandat 2402.714 kb on + strandat 2402.876 kb on + strand, within ABZR86_RS10825at 2403.030 kb on + strand, within ABZR86_RS10825at 2403.042 kb on + strand, within ABZR86_RS10825at 2403.043 kb on - strand, within ABZR86_RS10825at 2403.075 kb on + strand, within ABZR86_RS10825at 2403.076 kb on - strand, within ABZR86_RS10825at 2403.076 kb on - strand, within ABZR86_RS10825at 2403.478 kb on + strand, within ABZR86_RS10830at 2403.479 kb on - strand, within ABZR86_RS10830at 2403.625 kb on + strand, within ABZR86_RS10830at 2404.045 kb on + strand, within ABZR86_RS10830at 2404.183 kb on + strandat 2404.183 kb on + strandat 2404.226 kb on - strandat 2404.234 kb on + strandat 2404.234 kb on + strandat 2404.234 kb on + strandat 2404.234 kb on + strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.317 kb on + strandat 2404.317 kb on + strandat 2404.317 kb on + strandat 2404.318 kb on - strandat 2404.318 kb on - strandat 2404.318 kb on - strandat 2404.325 kb on - strandat 2404.609 kb on - strand, within ABZR86_RS10835

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
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2,402,700 + -2.3
2,402,701 - +0.2
2,402,714 + +0.2
2,402,876 + ABZR86_RS10825 0.41 -0.6
2,403,030 + ABZR86_RS10825 0.76 -0.1
2,403,042 + ABZR86_RS10825 0.79 +0.2
2,403,043 - ABZR86_RS10825 0.79 -0.3
2,403,075 + ABZR86_RS10825 0.86 -0.1
2,403,076 - ABZR86_RS10825 0.87 -0.3
2,403,076 - ABZR86_RS10825 0.87 -2.0
2,403,478 + ABZR86_RS10830 0.34 -1.3
2,403,479 - ABZR86_RS10830 0.34 -1.2
2,403,625 + ABZR86_RS10830 0.48 -0.7
2,404,045 + ABZR86_RS10830 0.88 -1.5
2,404,183 + -1.0
2,404,183 + -1.0
2,404,226 - -0.9
2,404,234 + -0.1
2,404,234 + -0.0
2,404,234 + +0.3
2,404,234 + +0.4
2,404,235 - +0.5
2,404,235 - +0.3
2,404,235 - +0.1
2,404,235 - +0.2
2,404,235 - +0.2
2,404,317 + +0.0
2,404,317 + +0.1
2,404,317 + +0.2
2,404,318 - +0.2
2,404,318 - -0.5
2,404,318 - -0.6
2,404,325 - +0.5
2,404,609 - ABZR86_RS10835 0.14 -0.6

Or see this region's nucleotide sequence