Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07665

Experiment: nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07660 and ABZR86_RS07665 overlap by 4 nucleotidesABZR86_RS07665 and ABZR86_RS07670 overlap by 11 nucleotides ABZR86_RS07660: ABZR86_RS07660 - exodeoxyribonuclease V subunit gamma, at 1,699,249 to 1,702,737 _RS07660 ABZR86_RS07665: ABZR86_RS07665 - exodeoxyribonuclease V subunit beta, at 1,702,734 to 1,706,405 _RS07665 ABZR86_RS07670: ABZR86_RS07670 - exodeoxyribonuclease V subunit alpha, at 1,706,395 to 1,708,341 _RS07670 Position (kb) 1702 1703 1704 1705 1706 1707Strain fitness (log2 ratio) -3 -2 -1 0 1at 1701.877 kb on + strand, within ABZR86_RS07660at 1701.878 kb on - strand, within ABZR86_RS07660at 1702.162 kb on + strand, within ABZR86_RS07660at 1702.253 kb on - strand, within ABZR86_RS07660at 1702.253 kb on - strand, within ABZR86_RS07660at 1702.620 kb on + strandat 1702.624 kb on + strandat 1702.624 kb on + strandat 1702.625 kb on - strandat 1702.625 kb on - strandat 1702.625 kb on - strandat 1703.959 kb on - strand, within ABZR86_RS07665at 1704.754 kb on + strand, within ABZR86_RS07665at 1705.233 kb on + strand, within ABZR86_RS07665at 1705.234 kb on - strand, within ABZR86_RS07665at 1705.432 kb on + strand, within ABZR86_RS07665at 1705.433 kb on - strand, within ABZR86_RS07665at 1705.522 kb on - strand, within ABZR86_RS07665at 1705.522 kb on - strand, within ABZR86_RS07665at 1705.600 kb on + strand, within ABZR86_RS07665at 1705.601 kb on - strand, within ABZR86_RS07665at 1705.995 kb on - strand, within ABZR86_RS07665at 1706.094 kb on + strandat 1706.095 kb on - strandat 1706.106 kb on + strandat 1706.142 kb on + strandat 1706.196 kb on + strandat 1706.205 kb on + strandat 1706.205 kb on + strandat 1706.251 kb on - strandat 1706.940 kb on + strand, within ABZR86_RS07670

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
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1,701,877 + ABZR86_RS07660 0.75 -1.0
1,701,878 - ABZR86_RS07660 0.75 -1.2
1,702,162 + ABZR86_RS07660 0.83 +0.3
1,702,253 - ABZR86_RS07660 0.86 -2.2
1,702,253 - ABZR86_RS07660 0.86 -0.1
1,702,620 + -0.6
1,702,624 + -2.1
1,702,624 + -1.5
1,702,625 - -0.6
1,702,625 - -2.6
1,702,625 - -2.4
1,703,959 - ABZR86_RS07665 0.33 -0.9
1,704,754 + ABZR86_RS07665 0.55 -2.1
1,705,233 + ABZR86_RS07665 0.68 -0.2
1,705,234 - ABZR86_RS07665 0.68 -1.4
1,705,432 + ABZR86_RS07665 0.73 -1.2
1,705,433 - ABZR86_RS07665 0.74 -0.9
1,705,522 - ABZR86_RS07665 0.76 -1.8
1,705,522 - ABZR86_RS07665 0.76 -0.6
1,705,600 + ABZR86_RS07665 0.78 -1.1
1,705,601 - ABZR86_RS07665 0.78 -3.7
1,705,995 - ABZR86_RS07665 0.89 -1.3
1,706,094 + -2.2
1,706,095 - +1.0
1,706,106 + -1.9
1,706,142 + -1.5
1,706,196 + -1.9
1,706,205 + -1.9
1,706,205 + -0.6
1,706,251 - -1.1
1,706,940 + ABZR86_RS07670 0.28 -0.9

Or see this region's nucleotide sequence