Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06355

Experiment: nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06340 and ABZR86_RS06345 overlap by 4 nucleotidesABZR86_RS06345 and ABZR86_RS06350 are separated by 82 nucleotidesABZR86_RS06350 and ABZR86_RS06355 are separated by 195 nucleotidesABZR86_RS06355 and ABZR86_RS06360 are separated by 455 nucleotidesABZR86_RS06360 and ABZR86_RS06365 are separated by 76 nucleotides ABZR86_RS06340: ABZR86_RS06340 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,414,462 to 1,414,857 _RS06340 ABZR86_RS06345: ABZR86_RS06345 - succinate dehydrogenase, cytochrome b556 subunit, at 1,414,854 to 1,415,246 _RS06345 ABZR86_RS06350: ABZR86_RS06350 - DUF1674 domain-containing protein, at 1,415,329 to 1,415,433 _RS06350 ABZR86_RS06355: ABZR86_RS06355 - folate-binding protein YgfZ, at 1,415,629 to 1,416,426 _RS06355 ABZR86_RS06360: ABZR86_RS06360 - cell wall hydrolase, at 1,416,882 to 1,417,316 _RS06360 ABZR86_RS06365: ABZR86_RS06365 - glycine zipper 2TM domain-containing protein, at 1,417,393 to 1,417,878 _RS06365 Position (kb) 1415 1416 1417Strain fitness (log2 ratio) -1 0 1at 1415.273 kb on - strandat 1415.273 kb on - strandat 1415.273 kb on - strandat 1415.273 kb on - strandat 1415.273 kb on - strandat 1415.273 kb on - strandat 1415.488 kb on - strandat 1415.524 kb on - strandat 1415.524 kb on - strandat 1415.524 kb on - strandat 1415.524 kb on - strandat 1415.524 kb on - strandat 1415.533 kb on - strandat 1416.152 kb on - strand, within ABZR86_RS06355at 1416.207 kb on + strand, within ABZR86_RS06355at 1416.207 kb on + strand, within ABZR86_RS06355at 1416.207 kb on + strand, within ABZR86_RS06355at 1416.208 kb on - strand, within ABZR86_RS06355at 1416.251 kb on + strand, within ABZR86_RS06355at 1416.525 kb on + strandat 1416.525 kb on + strandat 1416.526 kb on - strandat 1416.526 kb on - strandat 1416.573 kb on + strandat 1416.834 kb on - strandat 1416.834 kb on - strandat 1416.834 kb on - strandat 1416.834 kb on - strandat 1416.862 kb on + strandat 1416.863 kb on - strandat 1416.863 kb on - strandat 1416.963 kb on + strand, within ABZR86_RS06360at 1416.963 kb on + strand, within ABZR86_RS06360at 1416.964 kb on - strand, within ABZR86_RS06360at 1416.964 kb on - strand, within ABZR86_RS06360at 1417.121 kb on - strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.210 kb on - strand, within ABZR86_RS06360at 1417.210 kb on - strand, within ABZR86_RS06360at 1417.210 kb on - strand, within ABZR86_RS06360at 1417.387 kb on + strandat 1417.388 kb on - strandat 1417.388 kb on - strandat 1417.388 kb on - strandat 1417.389 kb on + strandat 1417.389 kb on + strandat 1417.389 kb on + strandat 1417.389 kb on + strandat 1417.390 kb on - strandat 1417.390 kb on - strandat 1417.403 kb on + strandat 1417.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
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1,415,273 - -0.0
1,415,273 - +0.5
1,415,273 - +0.5
1,415,273 - +0.0
1,415,273 - +0.5
1,415,273 - -0.3
1,415,488 - +0.4
1,415,524 - -0.9
1,415,524 - +0.6
1,415,524 - +0.1
1,415,524 - +0.3
1,415,524 - -0.9
1,415,533 - -0.3
1,416,152 - ABZR86_RS06355 0.66 -1.0
1,416,207 + ABZR86_RS06355 0.72 -1.7
1,416,207 + ABZR86_RS06355 0.72 -0.7
1,416,207 + ABZR86_RS06355 0.72 -0.8
1,416,208 - ABZR86_RS06355 0.73 +0.1
1,416,251 + ABZR86_RS06355 0.78 -0.7
1,416,525 + -0.1
1,416,525 + +0.1
1,416,526 - +0.1
1,416,526 - -0.3
1,416,573 + -0.7
1,416,834 - -0.2
1,416,834 - +0.5
1,416,834 - +0.2
1,416,834 - +0.3
1,416,862 + +0.3
1,416,863 - +0.4
1,416,863 - -0.1
1,416,963 + ABZR86_RS06360 0.19 +0.2
1,416,963 + ABZR86_RS06360 0.19 +0.5
1,416,964 - ABZR86_RS06360 0.19 -0.1
1,416,964 - ABZR86_RS06360 0.19 +0.3
1,417,121 - ABZR86_RS06360 0.55 -0.9
1,417,209 + ABZR86_RS06360 0.75 -0.8
1,417,209 + ABZR86_RS06360 0.75 +0.0
1,417,209 + ABZR86_RS06360 0.75 -1.1
1,417,209 + ABZR86_RS06360 0.75 -0.4
1,417,209 + ABZR86_RS06360 0.75 +0.2
1,417,209 + ABZR86_RS06360 0.75 +0.8
1,417,209 + ABZR86_RS06360 0.75 +0.3
1,417,209 + ABZR86_RS06360 0.75 -0.1
1,417,209 + ABZR86_RS06360 0.75 +0.0
1,417,209 + ABZR86_RS06360 0.75 +0.1
1,417,209 + ABZR86_RS06360 0.75 +0.8
1,417,209 + ABZR86_RS06360 0.75 -0.2
1,417,210 - ABZR86_RS06360 0.75 -1.5
1,417,210 - ABZR86_RS06360 0.75 -0.3
1,417,210 - ABZR86_RS06360 0.75 -0.1
1,417,387 + -0.3
1,417,388 - +0.1
1,417,388 - +0.1
1,417,388 - -0.3
1,417,389 + -0.2
1,417,389 + -0.3
1,417,389 + -0.2
1,417,389 + +1.4
1,417,390 - +0.1
1,417,390 - +0.3
1,417,403 + -0.1
1,417,404 - -0.1

Or see this region's nucleotide sequence