Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04840

Experiment: nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04830 and ABZR86_RS04835 are separated by 161 nucleotidesABZR86_RS04835 and ABZR86_RS04840 are separated by 92 nucleotidesABZR86_RS04840 and ABZR86_RS04845 are separated by 214 nucleotidesABZR86_RS04845 and ABZR86_RS04850 are separated by 35 nucleotides ABZR86_RS04830: ABZR86_RS04830 - LysR family transcriptional regulator, at 1,080,482 to 1,081,399 _RS04830 ABZR86_RS04835: ABZR86_RS04835 - hypothetical protein, at 1,081,561 to 1,081,920 _RS04835 ABZR86_RS04840: ABZR86_RS04840 - serine hydrolase, at 1,082,013 to 1,083,386 _RS04840 ABZR86_RS04845: ABZR86_RS04845 - hypothetical protein, at 1,083,601 to 1,084,062 _RS04845 ABZR86_RS04850: ABZR86_RS04850 - LytTR family DNA-binding domain-containing protein, at 1,084,098 to 1,084,853 _RS04850 Position (kb) 1082 1083 1084Strain fitness (log2 ratio) -1 0 1at 1081.106 kb on + strand, within ABZR86_RS04830at 1081.106 kb on + strand, within ABZR86_RS04830at 1081.106 kb on + strand, within ABZR86_RS04830at 1081.107 kb on - strand, within ABZR86_RS04830at 1081.107 kb on - strand, within ABZR86_RS04830at 1081.107 kb on - strand, within ABZR86_RS04830at 1081.313 kb on + strandat 1081.313 kb on + strandat 1081.313 kb on + strandat 1081.314 kb on - strandat 1081.322 kb on + strandat 1081.323 kb on - strandat 1081.550 kb on + strandat 1081.574 kb on + strandat 1081.575 kb on - strandat 1081.732 kb on + strand, within ABZR86_RS04835at 1081.792 kb on + strand, within ABZR86_RS04835at 1081.793 kb on - strand, within ABZR86_RS04835at 1081.895 kb on - strandat 1081.906 kb on + strandat 1081.907 kb on - strandat 1081.908 kb on + strandat 1082.021 kb on - strandat 1082.021 kb on - strandat 1082.068 kb on + strandat 1082.128 kb on + strandat 1082.128 kb on + strandat 1082.129 kb on - strandat 1082.129 kb on - strandat 1082.377 kb on + strand, within ABZR86_RS04840at 1082.377 kb on + strand, within ABZR86_RS04840at 1082.377 kb on + strand, within ABZR86_RS04840at 1082.377 kb on + strand, within ABZR86_RS04840at 1082.378 kb on - strand, within ABZR86_RS04840at 1082.378 kb on - strand, within ABZR86_RS04840at 1082.378 kb on - strand, within ABZR86_RS04840at 1082.378 kb on - strand, within ABZR86_RS04840at 1082.378 kb on - strand, within ABZR86_RS04840at 1082.378 kb on - strand, within ABZR86_RS04840at 1082.378 kb on - strand, within ABZR86_RS04840at 1082.494 kb on - strand, within ABZR86_RS04840at 1082.542 kb on + strand, within ABZR86_RS04840at 1082.543 kb on - strand, within ABZR86_RS04840at 1083.100 kb on + strand, within ABZR86_RS04840at 1083.100 kb on + strand, within ABZR86_RS04840at 1083.100 kb on + strand, within ABZR86_RS04840at 1083.535 kb on - strandat 1083.623 kb on - strandat 1083.623 kb on - strandat 1083.623 kb on - strandat 1083.623 kb on - strandat 1083.933 kb on + strand, within ABZR86_RS04845at 1084.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
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1,081,106 + ABZR86_RS04830 0.68 +0.1
1,081,106 + ABZR86_RS04830 0.68 -0.0
1,081,106 + ABZR86_RS04830 0.68 +0.1
1,081,107 - ABZR86_RS04830 0.68 -0.1
1,081,107 - ABZR86_RS04830 0.68 -0.1
1,081,107 - ABZR86_RS04830 0.68 -1.3
1,081,313 + -0.4
1,081,313 + +0.2
1,081,313 + +0.9
1,081,314 - +0.7
1,081,322 + +0.1
1,081,323 - +0.2
1,081,550 + -0.4
1,081,574 + +0.6
1,081,575 - -0.2
1,081,732 + ABZR86_RS04835 0.47 -0.5
1,081,792 + ABZR86_RS04835 0.64 -0.4
1,081,793 - ABZR86_RS04835 0.64 +0.0
1,081,895 - -1.2
1,081,906 + +0.5
1,081,907 - -0.3
1,081,908 + +0.5
1,082,021 - +0.1
1,082,021 - +0.7
1,082,068 + -1.1
1,082,128 + +0.5
1,082,128 + -0.0
1,082,129 - -0.2
1,082,129 - -0.4
1,082,377 + ABZR86_RS04840 0.26 -0.8
1,082,377 + ABZR86_RS04840 0.26 -0.1
1,082,377 + ABZR86_RS04840 0.26 +0.5
1,082,377 + ABZR86_RS04840 0.26 +0.0
1,082,378 - ABZR86_RS04840 0.27 -0.1
1,082,378 - ABZR86_RS04840 0.27 +0.3
1,082,378 - ABZR86_RS04840 0.27 +0.1
1,082,378 - ABZR86_RS04840 0.27 +0.1
1,082,378 - ABZR86_RS04840 0.27 +0.1
1,082,378 - ABZR86_RS04840 0.27 +0.3
1,082,378 - ABZR86_RS04840 0.27 -0.2
1,082,494 - ABZR86_RS04840 0.35 +0.3
1,082,542 + ABZR86_RS04840 0.39 +0.0
1,082,543 - ABZR86_RS04840 0.39 +0.9
1,083,100 + ABZR86_RS04840 0.79 +0.6
1,083,100 + ABZR86_RS04840 0.79 +0.2
1,083,100 + ABZR86_RS04840 0.79 +0.3
1,083,535 - -0.2
1,083,623 - +0.4
1,083,623 - +1.2
1,083,623 - +0.2
1,083,623 - -0.3
1,083,933 + ABZR86_RS04845 0.72 -0.4
1,084,099 + +0.2

Or see this region's nucleotide sequence