Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02215

Experiment: nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02200 and ABZR86_RS02205 are separated by 118 nucleotidesABZR86_RS02205 and ABZR86_RS02210 are separated by 83 nucleotidesABZR86_RS02210 and ABZR86_RS02215 are separated by 141 nucleotidesABZR86_RS02215 and ABZR86_RS02220 are separated by 81 nucleotides ABZR86_RS02200: ABZR86_RS02200 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 473,171 to 475,441 _RS02200 ABZR86_RS02205: ABZR86_RS02205 - translation initiation factor IF-1, at 475,560 to 475,778 _RS02205 ABZR86_RS02210: ABZR86_RS02210 - polyhydroxyalkanoic acid system family protein, at 475,862 to 476,137 _RS02210 ABZR86_RS02215: ABZR86_RS02215 - FHA domain-containing protein, at 476,279 to 477,049 _RS02215 ABZR86_RS02220: ABZR86_RS02220 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 477,131 to 478,216 _RS02220 Position (kb) 476 477 478Strain fitness (log2 ratio) -2 -1 0 1at 475.439 kb on + strandat 475.440 kb on - strandat 475.440 kb on - strandat 475.440 kb on - strandat 475.440 kb on - strandat 475.852 kb on + strandat 475.853 kb on - strandat 475.915 kb on + strand, within ABZR86_RS02210at 475.915 kb on + strand, within ABZR86_RS02210at 475.916 kb on - strand, within ABZR86_RS02210at 475.916 kb on - strand, within ABZR86_RS02210at 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.165 kb on + strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.166 kb on - strandat 476.168 kb on + strandat 476.169 kb on - strandat 476.169 kb on - strandat 476.240 kb on - strandat 476.246 kb on + strandat 476.247 kb on - strandat 476.247 kb on - strandat 476.247 kb on - strandat 476.247 kb on - strandat 476.247 kb on - strandat 476.264 kb on + strandat 476.265 kb on - strandat 476.265 kb on - strandat 476.465 kb on + strand, within ABZR86_RS02215at 476.465 kb on + strand, within ABZR86_RS02215at 476.465 kb on + strand, within ABZR86_RS02215at 476.465 kb on + strand, within ABZR86_RS02215at 476.466 kb on - strand, within ABZR86_RS02215at 476.466 kb on - strand, within ABZR86_RS02215at 476.466 kb on - strand, within ABZR86_RS02215at 477.047 kb on + strandat 477.047 kb on + strandat 477.047 kb on + strandat 477.063 kb on + strandat 477.064 kb on - strandat 477.064 kb on - strandat 477.096 kb on - strandat 477.107 kb on + strandat 477.107 kb on + strandat 477.107 kb on + strandat 477.107 kb on + strandat 477.107 kb on + strandat 477.107 kb on + strandat 477.108 kb on - strandat 477.108 kb on - strandat 477.108 kb on - strandat 477.108 kb on - strandat 477.108 kb on - strandat 477.118 kb on + strandat 477.119 kb on - strandat 477.119 kb on - strandat 477.119 kb on - strandat 477.329 kb on + strand, within ABZR86_RS02220at 477.330 kb on - strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.417 kb on - strand, within ABZR86_RS02220at 477.417 kb on - strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.509 kb on + strand, within ABZR86_RS02220at 477.510 kb on - strand, within ABZR86_RS02220at 477.510 kb on - strand, within ABZR86_RS02220at 477.510 kb on - strand, within ABZR86_RS02220at 477.560 kb on + strand, within ABZR86_RS02220at 477.560 kb on + strand, within ABZR86_RS02220at 477.560 kb on + strand, within ABZR86_RS02220at 477.561 kb on - strand, within ABZR86_RS02220at 477.561 kb on - strand, within ABZR86_RS02220at 477.569 kb on + strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.603 kb on - strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.702 kb on - strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.863 kb on + strand, within ABZR86_RS02220at 477.863 kb on + strand, within ABZR86_RS02220at 477.864 kb on - strand, within ABZR86_RS02220at 477.864 kb on - strand, within ABZR86_RS02220at 477.953 kb on + strand, within ABZR86_RS02220at 477.954 kb on - strand, within ABZR86_RS02220at 477.980 kb on + strand, within ABZR86_RS02220at 477.981 kb on - strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 150 mM
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475,439 + -0.2
475,440 - -0.0
475,440 - -0.2
475,440 - +0.5
475,440 - +0.4
475,852 + -1.7
475,853 - -1.0
475,915 + ABZR86_RS02210 0.19 +0.5
475,915 + ABZR86_RS02210 0.19 -0.1
475,916 - ABZR86_RS02210 0.20 +0.2
475,916 - ABZR86_RS02210 0.20 -0.0
476,165 + +0.2
476,165 + -0.3
476,165 + -1.4
476,165 + +1.4
476,165 + -0.2
476,165 + -0.4
476,165 + -0.4
476,165 + +0.0
476,165 + +0.5
476,165 + -0.8
476,165 + -0.4
476,165 + -0.3
476,165 + -0.5
476,165 + -1.0
476,165 + +0.2
476,165 + -0.3
476,165 + -0.0
476,165 + -0.6
476,165 + +1.2
476,166 - -1.0
476,166 - +0.0
476,166 - -0.6
476,166 - -0.5
476,166 - -0.3
476,166 - -0.4
476,166 - -0.9
476,166 - +1.7
476,166 - -1.0
476,168 + +0.1
476,169 - -0.8
476,169 - -0.2
476,240 - +0.5
476,246 + -0.1
476,247 - -0.7
476,247 - -0.1
476,247 - -0.4
476,247 - -0.9
476,247 - +0.0
476,264 + +0.2
476,265 - -0.1
476,265 - +0.2
476,465 + ABZR86_RS02215 0.24 -1.7
476,465 + ABZR86_RS02215 0.24 -2.3
476,465 + ABZR86_RS02215 0.24 -0.3
476,465 + ABZR86_RS02215 0.24 -0.9
476,466 - ABZR86_RS02215 0.24 -2.1
476,466 - ABZR86_RS02215 0.24 -1.6
476,466 - ABZR86_RS02215 0.24 -1.6
477,047 + +0.2
477,047 + -1.1
477,047 + +0.0
477,063 + +0.1
477,064 - -0.1
477,064 - -0.1
477,096 - +0.2
477,107 + +0.1
477,107 + -0.2
477,107 + +0.5
477,107 + -1.3
477,107 + +0.1
477,107 + +1.2
477,108 - +0.1
477,108 - +0.2
477,108 - -0.2
477,108 - -0.7
477,108 - +0.4
477,118 + -0.5
477,119 - +0.4
477,119 - -0.4
477,119 - -0.4
477,329 + ABZR86_RS02220 0.18 +0.3
477,330 - ABZR86_RS02220 0.18 +0.2
477,416 + ABZR86_RS02220 0.26 +0.1
477,416 + ABZR86_RS02220 0.26 -0.4
477,416 + ABZR86_RS02220 0.26 +0.4
477,416 + ABZR86_RS02220 0.26 -0.4
477,417 - ABZR86_RS02220 0.26 +0.3
477,417 - ABZR86_RS02220 0.26 +0.2
477,467 + ABZR86_RS02220 0.31 -0.8
477,467 + ABZR86_RS02220 0.31 +0.4
477,467 + ABZR86_RS02220 0.31 -0.7
477,467 + ABZR86_RS02220 0.31 +0.1
477,467 + ABZR86_RS02220 0.31 +0.4
477,467 + ABZR86_RS02220 0.31 -0.4
477,467 + ABZR86_RS02220 0.31 +0.5
477,509 + ABZR86_RS02220 0.35 +0.3
477,510 - ABZR86_RS02220 0.35 +0.2
477,510 - ABZR86_RS02220 0.35 +0.4
477,510 - ABZR86_RS02220 0.35 -0.5
477,560 + ABZR86_RS02220 0.40 -0.0
477,560 + ABZR86_RS02220 0.40 +0.1
477,560 + ABZR86_RS02220 0.40 +0.5
477,561 - ABZR86_RS02220 0.40 -0.5
477,561 - ABZR86_RS02220 0.40 -0.0
477,569 + ABZR86_RS02220 0.40 -0.0
477,570 - ABZR86_RS02220 0.40 +0.2
477,570 - ABZR86_RS02220 0.40 +0.0
477,570 - ABZR86_RS02220 0.40 -0.4
477,570 - ABZR86_RS02220 0.40 -0.3
477,570 - ABZR86_RS02220 0.40 +0.2
477,603 - ABZR86_RS02220 0.43 +0.8
477,701 + ABZR86_RS02220 0.52 +0.5
477,701 + ABZR86_RS02220 0.52 -0.6
477,701 + ABZR86_RS02220 0.52 +0.2
477,701 + ABZR86_RS02220 0.52 +0.3
477,701 + ABZR86_RS02220 0.52 +0.3
477,702 - ABZR86_RS02220 0.53 +0.3
477,850 + ABZR86_RS02220 0.66 -0.2
477,850 + ABZR86_RS02220 0.66 -0.6
477,850 + ABZR86_RS02220 0.66 +0.6
477,850 + ABZR86_RS02220 0.66 -1.9
477,850 + ABZR86_RS02220 0.66 -0.0
477,851 - ABZR86_RS02220 0.66 +1.0
477,851 - ABZR86_RS02220 0.66 -0.1
477,851 - ABZR86_RS02220 0.66 +0.2
477,851 - ABZR86_RS02220 0.66 +0.6
477,863 + ABZR86_RS02220 0.67 -0.5
477,863 + ABZR86_RS02220 0.67 +0.2
477,864 - ABZR86_RS02220 0.67 -0.1
477,864 - ABZR86_RS02220 0.67 +0.7
477,953 + ABZR86_RS02220 0.76 +0.5
477,954 - ABZR86_RS02220 0.76 -0.6
477,980 + ABZR86_RS02220 0.78 -0.2
477,981 - ABZR86_RS02220 0.78 -1.0
477,983 + ABZR86_RS02220 0.78 -0.1
477,983 + ABZR86_RS02220 0.78 +0.7
477,983 + ABZR86_RS02220 0.78 +0.5
477,983 + ABZR86_RS02220 0.78 +0.0
477,984 - ABZR86_RS02220 0.79 +0.1
477,984 - ABZR86_RS02220 0.79 +0.3
477,984 - ABZR86_RS02220 0.79 +1.4
477,984 - ABZR86_RS02220 0.79 -0.1

Or see this region's nucleotide sequence