Experiment: nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00680 and ABZR86_RS00685 are separated by 274 nucleotides ABZR86_RS00685 and ABZR86_RS00690 are separated by 71 nucleotides ABZR86_RS00690 and ABZR86_RS00695 are separated by 473 nucleotides
ABZR86_RS00680: ABZR86_RS00680 - alanine--tRNA ligase, at 132,090 to 134,726
_RS00680
ABZR86_RS00685: ABZR86_RS00685 - carbon storage regulator CsrA, at 135,001 to 135,198
_RS00685
ABZR86_RS00690: ABZR86_RS00690 - tRNA-Ser, at 135,270 to 135,362
_RS00690
ABZR86_RS00695: ABZR86_RS00695 - UDP-2,3-diacylglucosamine diphosphatase, at 135,836 to 136,564
_RS00695
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 134.724 kb on + strand at 134.724 kb on + strand at 134.725 kb on - strand at 134.725 kb on - strand at 134.746 kb on + strand at 134.746 kb on + strand at 134.746 kb on + strand at 134.754 kb on + strand at 134.754 kb on + strand at 134.754 kb on + strand at 134.755 kb on - strand at 134.755 kb on - strand at 134.755 kb on - strand at 134.755 kb on - strand at 134.755 kb on - strand at 134.766 kb on + strand at 134.766 kb on + strand at 134.766 kb on + strand at 134.766 kb on + strand at 134.766 kb on + strand at 134.766 kb on + strand at 134.767 kb on - strand at 134.767 kb on - strand at 134.767 kb on - strand at 134.767 kb on - strand at 134.767 kb on - strand at 134.767 kb on - strand at 134.768 kb on + strand at 134.768 kb on + strand at 134.768 kb on + strand at 134.768 kb on + strand at 134.768 kb on + strand at 134.769 kb on - strand at 134.808 kb on + strand at 134.841 kb on + strand at 134.935 kb on + strand at 134.935 kb on + strand at 134.936 kb on - strand at 134.936 kb on - strand at 134.936 kb on - strand at 134.979 kb on + strand at 134.979 kb on + strand at 134.979 kb on + strand at 134.979 kb on + strand at 134.979 kb on + strand at 134.980 kb on - strand at 134.980 kb on - strand at 134.980 kb on - strand at 134.980 kb on - strand at 135.119 kb on + strand, within ABZR86_RS00685 at 135.365 kb on + strand at 135.365 kb on + strand at 135.366 kb on - strand at 135.366 kb on - strand at 135.397 kb on + strand at 135.398 kb on - strand at 135.398 kb on - strand at 135.398 kb on - strand at 135.620 kb on + strand at 135.620 kb on + strand at 135.620 kb on + strand at 135.620 kb on + strand at 135.621 kb on - strand at 135.621 kb on - strand at 135.621 kb on - strand at 135.621 kb on - strand at 135.621 kb on - strand at 135.621 kb on - strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.622 kb on + strand at 135.623 kb on - strand at 135.623 kb on - strand at 135.623 kb on - strand at 135.623 kb on - strand at 135.633 kb on + strand at 135.633 kb on + strand at 135.633 kb on + strand at 135.633 kb on + strand at 135.633 kb on + strand at 135.634 kb on - strand at 135.634 kb on - strand at 135.637 kb on + strand at 135.637 kb on + strand at 135.637 kb on + strand at 135.637 kb on + strand at 135.637 kb on + strand at 135.638 kb on - strand at 135.638 kb on - strand at 135.638 kb on - strand at 135.743 kb on - strand at 135.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 150 mM remove 134,724 + -0.2 134,724 + +1.7 134,725 - -0.0 134,725 - +0.5 134,746 + -0.7 134,746 + +0.3 134,746 + -0.3 134,754 + -0.3 134,754 + -0.3 134,754 + -0.1 134,755 - +1.0 134,755 - -0.4 134,755 - +0.3 134,755 - -0.3 134,755 - +0.3 134,766 + +0.0 134,766 + -0.0 134,766 + -0.8 134,766 + -0.5 134,766 + -0.3 134,766 + -0.1 134,767 - -0.0 134,767 - -0.5 134,767 - -0.2 134,767 - -0.6 134,767 - +0.5 134,767 - -1.2 134,768 + -0.1 134,768 + -0.3 134,768 + +0.2 134,768 + -0.7 134,768 + -0.1 134,769 - -0.8 134,808 + +0.5 134,841 + -0.3 134,935 + -0.0 134,935 + -0.3 134,936 - -2.3 134,936 - -1.3 134,936 - -1.1 134,979 + -0.5 134,979 + -0.1 134,979 + +0.2 134,979 + +0.3 134,979 + +0.2 134,980 - -3.0 134,980 - -1.8 134,980 - -1.1 134,980 - -1.7 135,119 + ABZR86_RS00685 0.60 -1.9 135,365 + -0.1 135,365 + -0.5 135,366 - +0.1 135,366 - -0.3 135,397 + -0.1 135,398 - +0.0 135,398 - -0.0 135,398 - +0.0 135,620 + +0.0 135,620 + -0.2 135,620 + -0.6 135,620 + +0.5 135,621 - -0.6 135,621 - -0.7 135,621 - +0.4 135,621 - -0.7 135,621 - -0.4 135,621 - +0.5 135,622 + +1.2 135,622 + +0.5 135,622 + -0.3 135,622 + +0.2 135,622 + -0.7 135,622 + +0.7 135,622 + -0.7 135,623 - -0.3 135,623 - +0.1 135,623 - +0.1 135,623 - -0.8 135,633 + -0.7 135,633 + +0.3 135,633 + +0.3 135,633 + -0.3 135,633 + +0.8 135,634 - -0.2 135,634 - -0.3 135,637 + -0.5 135,637 + +0.5 135,637 + +0.1 135,637 + -0.4 135,637 + +0.4 135,638 - +0.2 135,638 - +1.2 135,638 - -0.5 135,743 - -0.0 135,783 - -0.3
Or see this region's nucleotide sequence