Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004136 and ABIE53_004137 are separated by 57 nucleotides ABIE53_004137 and ABIE53_004138 are separated by 66 nucleotides ABIE53_004138 and ABIE53_004139 are separated by 252 nucleotides
ABIE53_004136: ABIE53_004136 - D-amino-acid dehydrogenase, at 308,941 to 310,173
_004136
ABIE53_004137: ABIE53_004137 - hypothetical protein, at 310,231 to 310,557
_004137
ABIE53_004138: ABIE53_004138 - diguanylate cyclase (GGDEF)-like protein, at 310,624 to 312,048
_004138
ABIE53_004139: ABIE53_004139 - LysR family transcriptional regulator of abg operon, at 312,301 to 313,251
_004139
Position (kb) 310
311
312
313 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 309.764 kb on - strand, within ABIE53_004136 at 309.821 kb on - strand, within ABIE53_004136 at 310.233 kb on - strand at 310.583 kb on + strand at 310.583 kb on + strand at 310.583 kb on - strand at 310.584 kb on - strand at 310.635 kb on + strand at 310.713 kb on - strand at 310.969 kb on + strand, within ABIE53_004138 at 311.131 kb on - strand, within ABIE53_004138 at 311.317 kb on + strand, within ABIE53_004138 at 311.318 kb on - strand, within ABIE53_004138 at 311.318 kb on - strand, within ABIE53_004138 at 311.318 kb on - strand, within ABIE53_004138 at 311.354 kb on + strand, within ABIE53_004138 at 311.366 kb on - strand, within ABIE53_004138 at 311.366 kb on - strand, within ABIE53_004138 at 311.437 kb on - strand, within ABIE53_004138 at 311.641 kb on + strand, within ABIE53_004138 at 311.641 kb on + strand, within ABIE53_004138 at 311.641 kb on + strand, within ABIE53_004138 at 311.641 kb on + strand, within ABIE53_004138 at 311.642 kb on - strand, within ABIE53_004138 at 311.642 kb on - strand, within ABIE53_004138 at 311.642 kb on - strand, within ABIE53_004138 at 311.670 kb on + strand, within ABIE53_004138 at 311.778 kb on - strand, within ABIE53_004138 at 311.778 kb on - strand, within ABIE53_004138 at 311.778 kb on - strand, within ABIE53_004138 at 311.885 kb on + strand, within ABIE53_004138 at 311.897 kb on + strand, within ABIE53_004138 at 311.897 kb on + strand, within ABIE53_004138 at 311.898 kb on - strand, within ABIE53_004138 at 311.898 kb on - strand, within ABIE53_004138 at 311.898 kb on - strand, within ABIE53_004138 at 311.898 kb on - strand, within ABIE53_004138 at 311.898 kb on - strand, within ABIE53_004138 at 311.965 kb on - strand at 312.052 kb on + strand at 312.052 kb on + strand at 312.052 kb on + strand at 312.053 kb on - strand at 312.060 kb on + strand at 312.060 kb on + strand at 312.061 kb on - strand at 312.061 kb on - strand at 312.065 kb on + strand at 312.066 kb on - strand at 312.066 kb on - strand at 312.072 kb on + strand at 312.101 kb on - strand at 312.101 kb on - strand at 312.113 kb on - strand at 312.113 kb on - strand at 312.144 kb on + strand at 312.145 kb on - strand at 312.145 kb on - strand at 312.145 kb on - strand at 312.152 kb on + strand at 312.204 kb on - strand at 312.214 kb on - strand at 312.214 kb on - strand at 312.283 kb on + strand at 312.283 kb on + strand at 312.284 kb on - strand at 312.284 kb on - strand at 312.284 kb on - strand at 312.317 kb on + strand at 312.317 kb on + strand at 312.317 kb on + strand at 312.659 kb on + strand, within ABIE53_004139 at 312.659 kb on + strand, within ABIE53_004139 at 312.659 kb on + strand, within ABIE53_004139 at 312.659 kb on + strand, within ABIE53_004139 at 312.660 kb on - strand, within ABIE53_004139 at 312.660 kb on - strand, within ABIE53_004139 at 312.660 kb on - strand, within ABIE53_004139 at 312.684 kb on - strand, within ABIE53_004139 at 312.708 kb on - strand, within ABIE53_004139 at 312.731 kb on - strand, within ABIE53_004139 at 312.731 kb on - strand, within ABIE53_004139 at 312.731 kb on - strand, within ABIE53_004139 at 312.776 kb on - strand, within ABIE53_004139 at 312.913 kb on + strand, within ABIE53_004139
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 309,764 - ABIE53_004136 0.67 +0.1 309,821 - ABIE53_004136 0.71 -2.1 310,233 - -1.0 310,583 + +0.3 310,583 + +0.3 310,583 - +0.2 310,584 - -1.7 310,635 + -1.2 310,713 - +2.9 310,969 + ABIE53_004138 0.24 -1.5 311,131 - ABIE53_004138 0.36 +0.3 311,317 + ABIE53_004138 0.49 -0.9 311,318 - ABIE53_004138 0.49 -0.2 311,318 - ABIE53_004138 0.49 -0.6 311,318 - ABIE53_004138 0.49 +0.3 311,354 + ABIE53_004138 0.51 -0.7 311,366 - ABIE53_004138 0.52 +3.3 311,366 - ABIE53_004138 0.52 +0.5 311,437 - ABIE53_004138 0.57 +1.8 311,641 + ABIE53_004138 0.71 -2.9 311,641 + ABIE53_004138 0.71 +1.1 311,641 + ABIE53_004138 0.71 +0.6 311,641 + ABIE53_004138 0.71 -1.7 311,642 - ABIE53_004138 0.71 +1.3 311,642 - ABIE53_004138 0.71 -1.5 311,642 - ABIE53_004138 0.71 -1.0 311,670 + ABIE53_004138 0.73 +0.2 311,778 - ABIE53_004138 0.81 -0.1 311,778 - ABIE53_004138 0.81 +0.3 311,778 - ABIE53_004138 0.81 +0.6 311,885 + ABIE53_004138 0.88 +0.3 311,897 + ABIE53_004138 0.89 -3.3 311,897 + ABIE53_004138 0.89 -0.5 311,898 - ABIE53_004138 0.89 -0.3 311,898 - ABIE53_004138 0.89 +0.0 311,898 - ABIE53_004138 0.89 +1.3 311,898 - ABIE53_004138 0.89 -1.0 311,898 - ABIE53_004138 0.89 +0.3 311,965 - +0.2 312,052 + +0.0 312,052 + +1.3 312,052 + +0.7 312,053 - -1.0 312,060 + -0.3 312,060 + -0.3 312,061 - -1.0 312,061 - -0.3 312,065 + +0.3 312,066 - -1.0 312,066 - -1.3 312,072 + -2.3 312,101 - -0.7 312,101 - +1.3 312,113 - -0.8 312,113 - -0.3 312,144 + -2.0 312,145 - +0.5 312,145 - +1.4 312,145 - -2.4 312,152 + -0.3 312,204 - -0.3 312,214 - -2.0 312,214 - -0.7 312,283 + -1.8 312,283 + -1.5 312,284 - -0.3 312,284 - +1.2 312,284 - +2.1 312,317 + -3.3 312,317 + -3.8 312,317 + -0.7 312,659 + ABIE53_004139 0.38 +0.4 312,659 + ABIE53_004139 0.38 -0.3 312,659 + ABIE53_004139 0.38 +0.5 312,659 + ABIE53_004139 0.38 -0.7 312,660 - ABIE53_004139 0.38 -2.1 312,660 - ABIE53_004139 0.38 +0.1 312,660 - ABIE53_004139 0.38 +1.9 312,684 - ABIE53_004139 0.40 +2.3 312,708 - ABIE53_004139 0.43 -0.3 312,731 - ABIE53_004139 0.45 -1.7 312,731 - ABIE53_004139 0.45 +1.2 312,731 - ABIE53_004139 0.45 +1.4 312,776 - ABIE53_004139 0.50 +0.3 312,913 + ABIE53_004139 0.64 -1.0
Or see this region's nucleotide sequence