Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003312

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,731,613	+		ABIE53_003310	0.67	+0.3
3,731,614	-		ABIE53_003310	0.67	+1.2
3,731,614	-		ABIE53_003310	0.67	-1.1
3,731,614	-		ABIE53_003310	0.67	-0.8
3,731,614	-		ABIE53_003310	0.67	+1.2
3,731,614	-		ABIE53_003310	0.67	-0.6
3,731,614	-		ABIE53_003310	0.67	-1.1
3,731,614	-		ABIE53_003310	0.67	-0.4
3,731,614	-		ABIE53_003310	0.67	+0.2
3,731,678	-		ABIE53_003310	0.75	-0.6
3,731,684	+		ABIE53_003310	0.76	+0.4
3,731,684	+		ABIE53_003310	0.76	-0.2
3,731,684	+		ABIE53_003310	0.76	-0.8
3,731,685	-		ABIE53_003310	0.76	+0.2
3,731,685	-		ABIE53_003310	0.76	+1.0
3,731,685	-		ABIE53_003310	0.76	-2.5
3,731,685	-		ABIE53_003310	0.76	+2.2
3,731,685	-		ABIE53_003310	0.76	+0.1
3,731,701	+		ABIE53_003310	0.79	-1.9
3,731,702	-		ABIE53_003310	0.79	+0.8
3,731,702	-		ABIE53_003310	0.79	-1.4
3,731,702	-		ABIE53_003310	0.79	-0.4
3,731,702	-		ABIE53_003310	0.79	+0.2
3,731,702	-		ABIE53_003310	0.79	-2.5
3,731,702	-		ABIE53_003310	0.79	-0.7
3,731,846	+				-0.4
3,731,847	-				+1.0
3,731,847	-				-0.9
3,731,847	-				+0.4
3,731,871	-				+1.6
3,731,871	-				+0.6
3,731,879	-				-1.4
3,732,111	+		ABIE53_003311	0.37	-1.4
3,732,127	+		ABIE53_003311	0.39	+0.2
3,732,127	+		ABIE53_003311	0.39	-0.4
3,732,127	+		ABIE53_003311	0.39	+1.6
3,732,128	-		ABIE53_003311	0.39	-0.4
3,732,128	-		ABIE53_003311	0.39	-1.2
3,732,141	+		ABIE53_003311	0.41	+3.3
3,732,141	+		ABIE53_003311	0.41	-1.1
3,732,142	-		ABIE53_003311	0.42	-0.2
3,732,142	-		ABIE53_003311	0.42	-0.4
3,732,142	-		ABIE53_003311	0.42	-0.0
3,732,142	-		ABIE53_003311	0.42	-0.4
3,732,142	-		ABIE53_003311	0.42	-0.0
3,732,186	+		ABIE53_003311	0.48	+1.1
3,732,186	+		ABIE53_003311	0.48	-1.7
3,732,186	+		ABIE53_003311	0.48	-0.4
3,732,186	+		ABIE53_003311	0.48	+1.9
3,732,187	-		ABIE53_003311	0.48	-1.4
3,732,187	-		ABIE53_003311	0.48	-1.1
3,732,187	-		ABIE53_003311	0.48	+2.0
3,732,233	+		ABIE53_003311	0.55	+2.2
3,732,234	-		ABIE53_003311	0.55	+0.2
3,732,273	+		ABIE53_003311	0.61	-3.0
3,732,273	+		ABIE53_003311	0.61	+0.8
3,732,273	+		ABIE53_003311	0.61	+0.6
3,732,273	+		ABIE53_003311	0.61	-1.1
3,732,274	-		ABIE53_003311	0.61	-2.2
3,732,274	-		ABIE53_003311	0.61	+1.4
3,732,274	-		ABIE53_003311	0.61	-3.2
3,732,274	-		ABIE53_003311	0.61	+0.0
3,732,337	-		ABIE53_003311	0.71	+0.6
3,732,337	-		ABIE53_003311	0.71	-1.1
3,732,389	+		ABIE53_003311	0.79	+1.2
3,732,389	+		ABIE53_003311	0.79	+0.8
3,732,389	+		ABIE53_003311	0.79	-3.2
3,732,389	+		ABIE53_003311	0.79	-0.2
3,732,390	-		ABIE53_003311	0.79	-0.9
3,732,390	-		ABIE53_003311	0.79	+2.2
3,732,390	-		ABIE53_003311	0.79	+1.1
3,732,390	-		ABIE53_003311	0.79	-2.1
3,732,390	-		ABIE53_003311	0.79	-0.1
3,732,390	-		ABIE53_003311	0.79	-0.2
3,732,579	+				-1.4
3,732,579	+				-1.6
3,732,579	+				-1.1
3,732,580	-				-2.3
3,732,605	+				-0.6
3,732,605	+				-1.1
3,732,606	-				+0.6
3,732,606	-				-1.1
3,732,606	-				-1.4
3,732,653	+		ABIE53_003312	0.12	-0.4
3,732,653	+		ABIE53_003312	0.12	-0.2
3,732,654	-		ABIE53_003312	0.12	+0.2
3,732,674	+		ABIE53_003312	0.16	-0.4
3,732,674	+		ABIE53_003312	0.16	-1.4
3,732,674	+		ABIE53_003312	0.16	-1.6
3,732,674	+		ABIE53_003312	0.16	-0.1
3,732,674	+		ABIE53_003312	0.16	-1.1
3,732,675	-		ABIE53_003312	0.16	-1.3
3,732,675	-		ABIE53_003312	0.16	+0.2
3,732,675	-		ABIE53_003312	0.16	+1.4
3,732,803	+		ABIE53_003312	0.43	+0.2
3,732,803	+		ABIE53_003312	0.43	-0.2
3,732,803	+		ABIE53_003312	0.43	-0.4
3,732,803	+		ABIE53_003312	0.43	-0.5
3,732,803	+		ABIE53_003312	0.43	-1.4
3,732,804	-		ABIE53_003312	0.43	-0.4
3,732,804	-		ABIE53_003312	0.43	-2.1
3,732,804	-		ABIE53_003312	0.43	+0.3
3,732,804	-		ABIE53_003312	0.43	+0.2
3,732,804	-		ABIE53_003312	0.43	+1.3
3,732,804	-		ABIE53_003312	0.43	-0.8
3,732,804	-		ABIE53_003312	0.43	-2.5
3,732,935	+		ABIE53_003312	0.70	+0.0
3,732,935	+		ABIE53_003312	0.70	+2.1
3,732,935	+		ABIE53_003312	0.70	-0.4
3,732,935	+		ABIE53_003312	0.70	-1.6
3,732,936	-		ABIE53_003312	0.70	-0.6
3,732,936	-		ABIE53_003312	0.70	-1.0
3,732,936	-		ABIE53_003312	0.70	+1.2
3,732,936	-		ABIE53_003312	0.70	-1.3
3,732,936	-		ABIE53_003312	0.70	-1.8
3,732,942	-		ABIE53_003312	0.71	-0.7
3,732,942	-		ABIE53_003312	0.71	-0.1
3,733,072	-				-1.4
3,733,086	+				-2.0
3,733,086	+				+1.0
3,733,117	+				+1.8
3,733,118	-				-0.7
3,733,118	-				+0.9
3,733,175	-		ABIE53_003313	0.19	+0.2
3,733,181	-		ABIE53_003313	0.21	-0.8
3,733,181	-		ABIE53_003313	0.21	+0.4
3,733,181	-		ABIE53_003313	0.21	-0.1
3,733,202	+		ABIE53_003313	0.25	-0.3
3,733,202	+		ABIE53_003313	0.25	-0.8
3,733,202	+		ABIE53_003313	0.25	+1.8
3,733,202	+		ABIE53_003313	0.25	+0.7
3,733,203	-		ABIE53_003313	0.25	+0.3
3,733,203	-		ABIE53_003313	0.25	+0.4
3,733,203	-		ABIE53_003313	0.25	+1.5
3,733,203	-		ABIE53_003313	0.25	-0.6
3,733,203	-		ABIE53_003313	0.25	+0.1
3,733,203	-		ABIE53_003313	0.25	-0.6
3,733,203	-		ABIE53_003313	0.25	-1.1
3,733,254	+		ABIE53_003313	0.36	+0.1
3,733,254	+		ABIE53_003313	0.36	-2.1
3,733,254	+		ABIE53_003313	0.36	-1.1
3,733,254	+		ABIE53_003313	0.36	-0.4
3,733,254	+		ABIE53_003313	0.36	-1.4
3,733,254	+		ABIE53_003313	0.36	-1.8
3,733,254	+		ABIE53_003313	0.36	-0.2
3,733,254	+		ABIE53_003313	0.36	-0.4
3,733,254	+		ABIE53_003313	0.36	-1.8
3,733,255	-		ABIE53_003313	0.36	+0.2
3,733,255	-		ABIE53_003313	0.36	-0.6
3,733,255	-		ABIE53_003313	0.36	-0.6
3,733,255	-		ABIE53_003313	0.36	-2.1
3,733,255	-		ABIE53_003313	0.36	+0.3
3,733,255	-		ABIE53_003313	0.36	+1.9
3,733,255	-		ABIE53_003313	0.36	+2.1
3,733,255	-		ABIE53_003313	0.36	+0.6
3,733,255	-		ABIE53_003313	0.36	-0.3
3,733,255	-		ABIE53_003313	0.36	+0.2
3,733,255	-		ABIE53_003313	0.36	+0.1
3,733,255	-		ABIE53_003313	0.36	-0.1
3,733,255	-		ABIE53_003313	0.36	+1.4
3,733,307	+		ABIE53_003313	0.47	-0.4
3,733,307	+		ABIE53_003313	0.47	+0.6
3,733,308	-		ABIE53_003313	0.48	+1.6
3,733,323	+		ABIE53_003313	0.51	-1.8
3,733,324	-		ABIE53_003313	0.51	+1.0
3,733,338	+		ABIE53_003313	0.54	-0.4
3,733,338	+		ABIE53_003313	0.54	+1.0
3,733,338	+		ABIE53_003313	0.54	-0.2
3,733,338	+		ABIE53_003313	0.54	-0.3
3,733,339	-		ABIE53_003313	0.54	-0.5
3,733,339	-		ABIE53_003313	0.54	+0.8
3,733,339	-		ABIE53_003313	0.54	+0.8
3,733,339	-		ABIE53_003313	0.54	+2.0
3,733,674	+		ABIE53_003314	0.25	+1.4
3,733,675	+		ABIE53_003314	0.25	+0.2
3,733,675	+		ABIE53_003314	0.25	-0.3
3,733,675	+		ABIE53_003314	0.25	+1.9
3,733,675	+		ABIE53_003314	0.25	+0.6
3,733,676	-		ABIE53_003314	0.26	+1.2
3,733,720	-		ABIE53_003314	0.34	-1.1
3,733,900	-		ABIE53_003314	0.70	+0.6
3,733,908	-		ABIE53_003314	0.71	-0.9
3,733,964	-		ABIE53_003314	0.82	-0.2
3,733,987	+		ABIE53_003314	0.87	+0.5
3,733,987	+		ABIE53_003314	0.87	-0.8
3,733,987	+		ABIE53_003314	0.87	-2.2
3,733,987	+		ABIE53_003314	0.87	-2.4
3,733,987	+		ABIE53_003314	0.87	+0.3
3,733,988	-		ABIE53_003314	0.87	-2.5
3,733,988	-		ABIE53_003314	0.87	+1.6
3,733,988	-		ABIE53_003314	0.87	+2.7
3,733,988	-		ABIE53_003314	0.87	-0.9
3,733,988	-		ABIE53_003314	0.87	-0.8
3,733,988	-		ABIE53_003314	0.87	-0.0
3,733,988	-		ABIE53_003314	0.87	-0.7
3,733,988	-		ABIE53_003314	0.87	-0.6
3,733,988	-		ABIE53_003314	0.87	-0.7
3,734,032	+				-1.9
3,734,032	+				-1.0
3,734,033	-				-0.8
3,734,033	-				-0.4
3,734,033	-				+0.2
3,734,033	-				+1.2
3,734,033	-				+2.7
3,734,033	-				+0.4
3,734,033	-				-1.6