Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001405

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,569,045	+		ABIE53_001404	0.51	-1.6
1,569,163	+		ABIE53_001404	0.58	+1.1
1,569,163	+		ABIE53_001404	0.58	+1.3
1,569,163	+		ABIE53_001404	0.58	+0.5
1,569,163	+		ABIE53_001404	0.58	-0.3
1,569,163	+		ABIE53_001404	0.58	-1.3
1,569,164	-		ABIE53_001404	0.58	+0.5
1,569,164	-		ABIE53_001404	0.58	+0.4
1,569,164	-		ABIE53_001404	0.58	+1.5
1,569,304	+		ABIE53_001404	0.65	-0.1
1,569,304	+		ABIE53_001404	0.65	+1.3
1,569,305	-		ABIE53_001404	0.65	+0.3
1,569,374	-		ABIE53_001404	0.69	-0.6
1,569,374	-		ABIE53_001404	0.69	+1.0
1,569,556	+		ABIE53_001404	0.79	+0.3
1,569,556	+		ABIE53_001404	0.79	+0.3
1,569,557	-		ABIE53_001404	0.79	+1.3
1,569,557	-		ABIE53_001404	0.79	-0.8
1,569,557	-		ABIE53_001404	0.79	+0.9
1,569,565	-		ABIE53_001404	0.79	-2.4
1,570,193	+		ABIE53_001405	0.13	+0.6
1,570,193	+		ABIE53_001405	0.13	+1.8
1,570,193	+		ABIE53_001405	0.13	-0.7
1,570,193	+		ABIE53_001405	0.13	+1.3
1,570,193	+		ABIE53_001405	0.13	-1.8
1,570,193	+		ABIE53_001405	0.13	-0.9
1,570,194	-		ABIE53_001405	0.13	-1.2
1,570,295	+		ABIE53_001405	0.19	-0.0
1,570,295	+		ABIE53_001405	0.19	-0.8
1,570,295	+		ABIE53_001405	0.19	-2.6
1,570,805	+		ABIE53_001405	0.49	+1.1
1,570,806	-		ABIE53_001405	0.49	-0.3
1,571,075	+		ABIE53_001405	0.64	-0.7
1,571,076	-		ABIE53_001405	0.64	-1.7
1,571,202	+		ABIE53_001405	0.72	-0.3
1,571,207	-		ABIE53_001405	0.72	-1.9
1,571,207	-		ABIE53_001405	0.72	-0.0
1,571,250	+		ABIE53_001405	0.74	-1.3
1,571,251	-		ABIE53_001405	0.74	+0.5
1,571,400	+		ABIE53_001405	0.83	-0.9
1,571,400	+		ABIE53_001405	0.83	-0.4
1,571,400	+		ABIE53_001405	0.83	+1.4
1,571,400	+		ABIE53_001405	0.83	-2.4
1,571,401	-		ABIE53_001405	0.83	-0.0
1,571,401	-		ABIE53_001405	0.83	+2.3
1,571,406	+		ABIE53_001405	0.83	-1.0
1,571,406	+		ABIE53_001405	0.83	-1.7
1,571,406	+		ABIE53_001405	0.83	-1.6
1,571,406	+		ABIE53_001405	0.83	-1.3
1,571,406	+		ABIE53_001405	0.83	-0.7
1,571,406	+		ABIE53_001405	0.83	+0.3
1,571,406	+		ABIE53_001405	0.83	-1.0
1,571,406	+		ABIE53_001405	0.83	-2.1
1,571,406	+		ABIE53_001405	0.83	-0.0
1,571,406	+		ABIE53_001405	0.83	+1.9
1,571,406	+		ABIE53_001405	0.83	+1.5
1,571,406	+		ABIE53_001405	0.83	-2.4
1,571,406	+		ABIE53_001405	0.83	-0.7
1,571,406	+		ABIE53_001405	0.83	-2.0
1,571,406	+		ABIE53_001405	0.83	-1.0
1,571,407	-		ABIE53_001405	0.83	-1.7
1,571,407	-		ABIE53_001405	0.83	+1.1
1,571,407	-		ABIE53_001405	0.83	-0.7
1,571,407	-		ABIE53_001405	0.83	-1.5
1,571,407	-		ABIE53_001405	0.83	+0.7
1,571,407	-		ABIE53_001405	0.83	+1.1
1,571,407	-		ABIE53_001405	0.83	-1.8
1,571,407	-		ABIE53_001405	0.83	-1.3
1,571,407	-		ABIE53_001405	0.83	-0.9
1,571,407	-		ABIE53_001405	0.83	+0.7
1,571,407	-		ABIE53_001405	0.83	+2.5
1,571,407	-		ABIE53_001405	0.83	+0.3
1,571,407	-		ABIE53_001405	0.83	-2.9
1,571,407	-		ABIE53_001405	0.83	+0.2
1,571,407	-		ABIE53_001405	0.83	-2.6
1,571,407	-		ABIE53_001405	0.83	+1.0
1,571,407	-		ABIE53_001405	0.83	-0.7
1,571,407	-		ABIE53_001405	0.83	-1.4
1,571,407	-		ABIE53_001405	0.83	-0.8
1,571,407	-		ABIE53_001405	0.83	-0.8
1,571,407	-		ABIE53_001405	0.83	-1.8
1,571,407	-		ABIE53_001405	0.83	-1.3
1,571,407	-		ABIE53_001405	0.83	-0.3
1,571,407	-		ABIE53_001405	0.83	-0.4
1,571,410	+		ABIE53_001405	0.84	+1.3
1,571,410	+		ABIE53_001405	0.84	+0.7
1,571,410	+		ABIE53_001405	0.84	-1.3
1,571,410	+		ABIE53_001405	0.84	+0.4
1,571,410	+		ABIE53_001405	0.84	-3.0
1,571,410	+		ABIE53_001405	0.84	+0.3
1,571,410	+		ABIE53_001405	0.84	+0.9
1,571,410	+		ABIE53_001405	0.84	-1.3
1,571,410	+		ABIE53_001405	0.84	+0.6
1,571,410	+		ABIE53_001405	0.84	-0.3
1,571,410	+		ABIE53_001405	0.84	+4.4
1,571,410	+		ABIE53_001405	0.84	-2.0
1,571,411	-		ABIE53_001405	0.84	-0.6
1,571,411	-		ABIE53_001405	0.84	-1.1
1,571,411	-		ABIE53_001405	0.84	-0.7
1,571,411	-		ABIE53_001405	0.84	+0.1
1,571,411	-		ABIE53_001405	0.84	-1.7
1,571,411	-		ABIE53_001405	0.84	+0.6
1,571,411	-		ABIE53_001405	0.84	+1.4
1,571,411	-		ABIE53_001405	0.84	-2.8
1,571,475	+		ABIE53_001405	0.87	+1.2
1,571,475	+		ABIE53_001405	0.87	-1.0
1,571,476	-		ABIE53_001405	0.87	-1.0
1,571,476	-		ABIE53_001405	0.87	-2.6
1,571,476	-		ABIE53_001405	0.87	-0.0
1,571,476	-		ABIE53_001405	0.87	-1.0
1,571,541	+				-0.9
1,571,542	-				+0.3
1,571,584	+				-0.2
1,571,584	+				-0.2
1,571,585	-				+1.6
1,571,678	+				-2.7
1,571,678	+				+0.3
1,571,679	-				+2.0
1,571,679	-				-1.3
1,571,780	+				-2.0
1,571,780	+				+2.3
1,571,780	+				+1.0
1,571,780	+				-1.7
1,571,780	+				-1.6
1,571,781	-				-0.7
1,571,781	-				+1.3
1,571,781	-				-0.1
1,571,781	-				+0.7
1,571,781	-				+0.9
1,571,781	-				-0.3
1,571,781	-				+2.1
1,571,781	-				-0.3
1,571,781	-				-1.0
1,571,888	+		ABIE53_001406	0.21	+1.1
1,571,889	-		ABIE53_001406	0.22	-0.3
1,571,889	-		ABIE53_001406	0.22	-1.1
1,571,889	-		ABIE53_001406	0.22	+0.6
1,571,889	-		ABIE53_001406	0.22	+0.9
1,571,889	-		ABIE53_001406	0.22	-2.3
1,571,889	-		ABIE53_001406	0.22	+2.0
1,571,987	+		ABIE53_001406	0.41	-0.3
1,571,987	+		ABIE53_001406	0.41	+1.0
1,571,987	+		ABIE53_001406	0.41	+0.2
1,572,012	+		ABIE53_001406	0.46	+0.5
1,572,013	-		ABIE53_001406	0.46	-0.3
1,572,014	+		ABIE53_001406	0.46	-1.3
1,572,015	-		ABIE53_001406	0.47	-0.7
1,572,244	+				-2.5
1,572,244	+				-0.3
1,572,245	-				+1.4
1,572,352	+				+1.3
1,572,353	-				-0.5
1,572,353	-				+0.3
1,572,368	+				+0.7
1,572,368	+				+0.3
1,572,368	+				+1.8
1,572,369	-				-2.1
1,572,369	-				-0.6
1,572,369	-				-1.0
1,572,369	-				-0.9
1,572,369	-				-1.9
1,572,440	-				+0.1
1,572,440	-				+1.3
1,572,440	-				+1.3
1,572,440	-				-0.3
1,572,510	+				-1.5
1,572,511	-				-0.3
1,572,512	+				-2.0
1,572,513	-				-0.9
1,572,529	+				+0.3
1,572,530	-				-1.4
1,572,530	-				-1.3