Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2785

Experiment: MoYLS4 with benzoic 0.64 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2784 and DvMF_2785 are separated by 536 nucleotidesDvMF_2785 and DvMF_2786 are separated by 324 nucleotides DvMF_2784: DvMF_2784 - two component transcriptional regulator, LytTR family (RefSeq), at 3,523,231 to 3,524,307 _2784 DvMF_2785: DvMF_2785 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,524,844 to 3,526,868 _2785 DvMF_2786: DvMF_2786 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,527,193 to 3,528,983 _2786 Position (kb) 3524 3525 3526 3527Strain fitness (log2 ratio) -1 0 1at 3523.877 kb on + strand, within DvMF_2784at 3523.914 kb on + strand, within DvMF_2784at 3523.980 kb on + strand, within DvMF_2784at 3524.019 kb on + strand, within DvMF_2784at 3524.169 kb on - strand, within DvMF_2784at 3524.418 kb on + strandat 3524.722 kb on + strandat 3525.760 kb on + strand, within DvMF_2785at 3525.988 kb on + strand, within DvMF_2785at 3526.064 kb on - strand, within DvMF_2785at 3526.101 kb on - strand, within DvMF_2785at 3526.513 kb on + strand, within DvMF_2785at 3526.728 kb on + strandat 3526.864 kb on + strandat 3526.974 kb on - strandat 3527.492 kb on - strand, within DvMF_2786at 3527.615 kb on + strand, within DvMF_2786at 3527.854 kb on + strand, within DvMF_2786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.64 mg/ml
remove
3,523,877 + DvMF_2784 0.60 +0.0
3,523,914 + DvMF_2784 0.63 +0.6
3,523,980 + DvMF_2784 0.70 -0.6
3,524,019 + DvMF_2784 0.73 +0.2
3,524,169 - DvMF_2784 0.87 -0.1
3,524,418 + -0.2
3,524,722 + -0.4
3,525,760 + DvMF_2785 0.45 -0.5
3,525,988 + DvMF_2785 0.56 -0.2
3,526,064 - DvMF_2785 0.60 +0.9
3,526,101 - DvMF_2785 0.62 -0.3
3,526,513 + DvMF_2785 0.82 +0.6
3,526,728 + -0.4
3,526,864 + -0.5
3,526,974 - -0.1
3,527,492 - DvMF_2786 0.17 +0.2
3,527,615 + DvMF_2786 0.24 -0.1
3,527,854 + DvMF_2786 0.37 -0.1

Or see this region's nucleotide sequence