Experiment: MoYLS4 with benzoic 0.64 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2687 and DvMF_2688 are separated by 9 nucleotides DvMF_2688 and DvMF_2689 are separated by 12 nucleotides DvMF_2689 and DvMF_2690 are separated by 12 nucleotides DvMF_2690 and DvMF_2691 are separated by 165 nucleotides
DvMF_2687: DvMF_2687 - Polysulphide reductase NrfD (RefSeq), at 3,399,310 to 3,400,563
_2687
DvMF_2688: DvMF_2688 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,400,573 to 3,401,340
_2688
DvMF_2689: DvMF_2689 - molybdopterin oxidoreductase (RefSeq), at 3,401,353 to 3,403,428
_2689
DvMF_2690: DvMF_2690 - hypothetical protein (RefSeq), at 3,403,441 to 3,404,076
_2690
DvMF_2691: DvMF_2691 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq), at 3,404,242 to 3,405,747
_2691
Position (kb)
3401
3402
3403
3404 Strain fitness (log2 ratio)
-2
-1
0
1 at 3400.412 kb on - strand, within DvMF_2687 at 3400.585 kb on - strand at 3400.585 kb on - strand at 3400.661 kb on + strand, within DvMF_2688 at 3400.661 kb on + strand, within DvMF_2688 at 3401.351 kb on + strand at 3401.532 kb on + strand at 3402.184 kb on - strand, within DvMF_2689 at 3402.306 kb on - strand, within DvMF_2689 at 3402.466 kb on + strand, within DvMF_2689 at 3402.688 kb on + strand, within DvMF_2689 at 3402.696 kb on - strand, within DvMF_2689 at 3403.857 kb on + strand, within DvMF_2690 at 3403.865 kb on - strand, within DvMF_2690 at 3404.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.64 mg/ml remove 3,400,412 - DvMF_2687 0.88 -2.3 3,400,585 - -0.3 3,400,585 - -1.0 3,400,661 + DvMF_2688 0.11 -0.9 3,400,661 + DvMF_2688 0.11 -0.3 3,401,351 + -1.5 3,401,532 + -1.4 3,402,184 - DvMF_2689 0.40 -1.9 3,402,306 - DvMF_2689 0.46 -0.8 3,402,466 + DvMF_2689 0.54 -2.6 3,402,688 + DvMF_2689 0.64 -1.8 3,402,696 - DvMF_2689 0.65 -0.5 3,403,857 + DvMF_2690 0.65 -0.2 3,403,865 - DvMF_2690 0.67 -2.5 3,404,086 - -0.3
Or see this region's nucleotide sequence