Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2051

Experiment: MoYLS4 with benzoic 0.64 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2050 and DvMF_2051 overlap by 19 nucleotidesDvMF_2051 and DvMF_2052 are separated by 232 nucleotides DvMF_2050: DvMF_2050 - hypothetical protein (RefSeq), at 2,542,149 to 2,543,201 _2050 DvMF_2051: DvMF_2051 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (RefSeq), at 2,543,183 to 2,544,430 _2051 DvMF_2052: DvMF_2052 - hypothetical protein (RefSeq), at 2,544,663 to 2,545,223 _2052 Position (kb) 2543 2544 2545Strain fitness (log2 ratio) -1 0 1at 2544.459 kb on - strandat 2544.490 kb on - strandat 2544.492 kb on + strandat 2544.500 kb on - strandat 2544.519 kb on + strandat 2544.572 kb on - strandat 2544.683 kb on - strandat 2544.771 kb on - strand, within DvMF_2052at 2544.798 kb on - strand, within DvMF_2052at 2544.826 kb on - strand, within DvMF_2052at 2544.829 kb on + strand, within DvMF_2052at 2544.837 kb on - strand, within DvMF_2052at 2544.837 kb on - strand, within DvMF_2052at 2544.931 kb on - strand, within DvMF_2052at 2544.933 kb on - strand, within DvMF_2052at 2544.966 kb on - strand, within DvMF_2052at 2545.039 kb on + strand, within DvMF_2052at 2545.047 kb on - strand, within DvMF_2052at 2545.058 kb on - strand, within DvMF_2052at 2545.233 kb on - strandat 2545.233 kb on - strandat 2545.233 kb on - strandat 2545.419 kb on - strandat 2545.427 kb on + strandat 2545.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.64 mg/ml
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2,544,459 - -0.6
2,544,490 - -0.1
2,544,492 + -0.2
2,544,500 - +0.0
2,544,519 + -0.6
2,544,572 - -0.3
2,544,683 - +0.2
2,544,771 - DvMF_2052 0.19 +0.0
2,544,798 - DvMF_2052 0.24 -0.1
2,544,826 - DvMF_2052 0.29 -1.6
2,544,829 + DvMF_2052 0.30 -0.3
2,544,837 - DvMF_2052 0.31 +0.4
2,544,837 - DvMF_2052 0.31 -0.2
2,544,931 - DvMF_2052 0.48 -0.2
2,544,933 - DvMF_2052 0.48 -0.2
2,544,966 - DvMF_2052 0.54 -0.7
2,545,039 + DvMF_2052 0.67 -0.1
2,545,047 - DvMF_2052 0.68 -0.1
2,545,058 - DvMF_2052 0.70 -0.3
2,545,233 - +0.0
2,545,233 - -0.5
2,545,233 - -0.1
2,545,419 - +0.6
2,545,427 + -0.1
2,545,427 + -0.2

Or see this region's nucleotide sequence