Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1817

Experiment: MoYLS4 with benzoic 0.64 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1815 and DvMF_1816 are separated by 215 nucleotidesDvMF_1816 and DvMF_1817 are separated by 407 nucleotidesDvMF_1817 and DvMF_1818 are separated by 551 nucleotides DvMF_1815: DvMF_1815 - hypothetical protein (RefSeq), at 2,216,508 to 2,216,786 _1815 DvMF_1816: DvMF_1816 - TPR repeat-containing protein (RefSeq), at 2,217,002 to 2,217,328 _1816 DvMF_1817: DvMF_1817 - chemotaxis protein CheX, putative (RefSeq), at 2,217,736 to 2,218,200 _1817 DvMF_1818: DvMF_1818 - Radical SAM domain protein (RefSeq), at 2,218,752 to 2,219,468 _1818 Position (kb) 2217 2218 2219Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2216.740 kb on + strand, within DvMF_1815at 2216.749 kb on + strand, within DvMF_1815at 2216.766 kb on + strandat 2217.000 kb on - strandat 2217.073 kb on - strand, within DvMF_1816at 2217.298 kb on + strandat 2217.354 kb on + strandat 2217.357 kb on - strandat 2217.432 kb on + strandat 2217.548 kb on - strandat 2217.581 kb on - strandat 2217.953 kb on - strand, within DvMF_1817at 2218.537 kb on - strandat 2218.970 kb on + strand, within DvMF_1818at 2218.978 kb on - strand, within DvMF_1818

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.64 mg/ml
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2,216,740 + DvMF_1815 0.83 -0.5
2,216,749 + DvMF_1815 0.86 -0.5
2,216,766 + +0.3
2,217,000 - -0.5
2,217,073 - DvMF_1816 0.22 -0.7
2,217,298 + +0.0
2,217,354 + -0.3
2,217,357 - -0.1
2,217,432 + -0.4
2,217,548 - -0.2
2,217,581 - -0.6
2,217,953 - DvMF_1817 0.47 -0.1
2,218,537 - -0.1
2,218,970 + DvMF_1818 0.30 -0.8
2,218,978 - DvMF_1818 0.32 -4.1

Or see this region's nucleotide sequence