Strain Fitness in Shewanella loihica PV-4 around Shew_3824

Experiment: Polymyxin B sulfate 20 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Polymyxin B sulfate 20 mg/ml
4,551,872	+		Shew_3822	0.57	+0.3
4,551,884	+		Shew_3822	0.59	-3.7
4,551,884	+		Shew_3822	0.59	-0.2
4,551,884	+		Shew_3822	0.59	-2.5
4,551,916	+		Shew_3822	0.62	-0.6
4,551,951	+		Shew_3822	0.66	-1.5
4,552,107	+		Shew_3822	0.82	-2.7
4,552,180	+		Shew_3822	0.89	-0.3
4,552,186	+		Shew_3822	0.90	+0.7
4,552,196	+				+0.2
4,552,203	+				+0.8
4,552,269	+				-1.0
4,552,312	+				-0.5
4,552,320	+				-0.5
4,552,411	+				-0.2
4,552,411	+				-1.1
4,552,411	+				+0.6
4,552,411	+				+0.7
4,552,411	+				-2.0
4,552,419	-				+0.5
4,552,419	-				+0.4
4,552,419	-				+0.2
4,552,419	-				+0.3
4,552,419	-				+0.3
4,552,419	-				+0.2
4,552,424	-				+0.4
4,552,429	-				-0.0
4,552,447	+				-0.1
4,552,455	-				-2.0
4,552,456	+				+0.5
4,552,458	+				-0.7
4,552,464	-		Shew_3823	0.12	-0.1
4,552,465	-		Shew_3823	0.12	+0.5
4,552,465	-		Shew_3823	0.12	+1.3
4,552,467	+		Shew_3823	0.13	-0.0
4,552,472	+		Shew_3823	0.14	-0.2
4,552,472	+		Shew_3823	0.14	+0.4
4,552,472	+		Shew_3823	0.14	+0.3
4,552,480	-		Shew_3823	0.17	+0.9
4,552,505	+		Shew_3823	0.26	+0.8
4,552,513	-		Shew_3823	0.28	-0.4
4,552,513	-		Shew_3823	0.28	+0.6
4,552,516	+		Shew_3823	0.29	+0.8
4,552,517	+		Shew_3823	0.30	+1.2
4,552,574	-		Shew_3823	0.49	+0.1
4,552,642	+		Shew_3823	0.72	-0.0
4,552,642	+		Shew_3823	0.72	-0.6
4,552,649	-		Shew_3823	0.74	+0.1
4,552,650	-		Shew_3823	0.75	+0.4
4,552,650	-		Shew_3823	0.75	+0.2
4,552,650	-		Shew_3823	0.75	+0.5
4,552,735	+				-0.1
4,552,781	-				-3.0
4,552,814	-				-0.0
4,552,932	-		Shew_3824	0.11	-0.1
4,552,971	-		Shew_3824	0.14	-0.7
4,552,988	-		Shew_3824	0.15	+0.3
4,553,007	+		Shew_3824	0.16	+1.7
4,553,007	+		Shew_3824	0.16	+0.3
4,553,062	+		Shew_3824	0.19	-4.4
4,553,062	+		Shew_3824	0.19	+0.5
4,553,072	+		Shew_3824	0.20	-0.0
4,553,112	+		Shew_3824	0.22	-1.3
4,553,204	+		Shew_3824	0.28	+0.2
4,553,233	-		Shew_3824	0.30	-0.3
4,553,325	+		Shew_3824	0.36	+0.3
4,553,326	+		Shew_3824	0.36	-0.7
4,553,358	+		Shew_3824	0.38	-0.4
4,553,366	-		Shew_3824	0.38	+0.1
4,553,525	+		Shew_3824	0.48	+1.5
4,553,673	-		Shew_3824	0.57	+0.7
4,553,682	-		Shew_3824	0.58	+0.6
4,553,882	+		Shew_3824	0.71	+1.0
4,553,890	-		Shew_3824	0.71	+1.5
4,553,990	-		Shew_3824	0.77	+0.8
4,553,999	+		Shew_3824	0.78	+0.5
4,554,043	+		Shew_3824	0.81	+0.3
4,554,073	-		Shew_3824	0.82	+0.8
4,554,180	-		Shew_3824	0.89	+0.5
4,554,254	-				-0.6
4,554,321	+				-1.1
4,554,339	-				-0.2
4,554,339	-				+0.2
4,554,348	+				-1.0
4,554,386	+				+0.6
4,554,394	-				+0.7
4,554,414	+				+0.9
4,554,414	+				-0.0
4,554,414	+				-0.7
4,554,414	+				-0.1
4,554,422	-				+0.3
4,554,581	+		Shew_3825	0.18	-0.1
4,554,603	+		Shew_3825	0.19	+0.3
4,554,603	+		Shew_3825	0.19	-1.8
4,554,611	-		Shew_3825	0.19	+0.8
4,554,611	+		Shew_3825	0.19	-1.8
4,554,629	-		Shew_3825	0.21	-0.9
4,554,794	+		Shew_3825	0.31	-2.0
4,554,809	-		Shew_3825	0.32	+1.3
4,554,825	+		Shew_3825	0.33	-0.1
4,554,833	-		Shew_3825	0.34	-0.1
4,554,833	-		Shew_3825	0.34	-0.2
4,554,833	-		Shew_3825	0.34	+0.3
4,554,961	+		Shew_3825	0.42	-0.2
4,554,968	+		Shew_3825	0.43	-0.1
4,554,980	+		Shew_3825	0.43	-0.4
4,555,062	-		Shew_3825	0.49	-0.1
4,555,151	-		Shew_3825	0.54	+0.0
4,555,162	+		Shew_3825	0.55	+0.4
4,555,316	-		Shew_3825	0.65	+0.3
4,555,320	+		Shew_3825	0.65	+0.2
4,555,336	-		Shew_3825	0.66	+0.8