Strain Fitness in Shewanella loihica PV-4 around Shew_3056

Experiment: Polymyxin B sulfate 20 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Polymyxin B sulfate 20 mg/ml
3,627,300	-				+0.1
3,627,316	-				+0.3
3,627,342	+				+0.5
3,627,750	+		Shew_3055	0.68	-4.0
3,627,768	+		Shew_3055	0.72	-4.7
3,627,809	-		Shew_3055	0.81	-2.7
3,627,839	-		Shew_3055	0.88	-2.7
3,627,868	+				-0.8
3,627,868	+				+0.7
3,627,885	-				+0.2
3,627,887	+				+1.5
3,627,887	+				-0.4
3,627,895	-				+0.1
3,627,895	-				+0.8
3,627,895	-				+1.2
3,627,895	-				-0.2
3,627,897	+				-0.6
3,627,944	+				-0.6
3,628,134	+		Shew_3056	0.18	+0.8
3,628,139	+		Shew_3056	0.18	-1.3
3,628,142	-		Shew_3056	0.19	+0.8
3,628,147	-		Shew_3056	0.20	+0.6
3,628,147	-		Shew_3056	0.20	+0.2
3,628,164	+		Shew_3056	0.23	+0.5
3,628,172	-		Shew_3056	0.24	-0.4
3,628,185	-		Shew_3056	0.27	+0.1
3,628,187	-		Shew_3056	0.27	-0.8
3,628,246	-		Shew_3056	0.37	-0.6
3,628,250	+		Shew_3056	0.38	-0.4
3,628,250	+		Shew_3056	0.38	-0.0
3,628,250	+		Shew_3056	0.38	+0.5
3,628,258	-		Shew_3056	0.39	-0.4
3,628,259	-		Shew_3056	0.39	+0.3
3,628,322	+		Shew_3056	0.50	-2.7
3,628,323	-		Shew_3056	0.51	-1.2
3,628,330	-		Shew_3056	0.52	-0.4
3,628,363	+		Shew_3056	0.58	+0.4
3,628,508	+		Shew_3056	0.83	-0.7
3,628,516	-		Shew_3056	0.84	-1.0
3,628,556	+				-0.0
3,628,556	+				-0.6
3,628,556	+				+1.5
3,628,564	-				+0.1
3,628,564	-				-0.3
3,628,564	-				+0.1
3,628,644	+				-0.8
3,628,646	+				+1.2
3,628,711	+		Shew_3057	0.23	+0.5
3,628,745	-		Shew_3057	0.33	+0.5
3,628,781	+		Shew_3057	0.44	-0.3
3,628,910	+		Shew_3057	0.83	-0.1
3,628,918	-		Shew_3057	0.85	-0.1
3,629,052	+				-0.9
3,629,347	-		Shew_3058	0.16	+0.0
3,629,353	-		Shew_3058	0.16	-0.2