Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2962 and Shew_2963 are separated by 210 nucleotides Shew_2963 and Shew_2964 are separated by 55 nucleotides Shew_2964 and Shew_2965 are separated by 22 nucleotides
Shew_2962: Shew_2962 - malate dehydrogenase (RefSeq), at 3,513,984 to 3,515,672
_2962
Shew_2963: Shew_2963 - hypothetical protein (RefSeq), at 3,515,883 to 3,516,347
_2963
Shew_2964: Shew_2964 - beta-lactamase (RefSeq), at 3,516,403 to 3,517,545
_2964
Shew_2965: Shew_2965 - putative manganese transporter (RefSeq), at 3,517,568 to 3,518,836
_2965
Position (kb)
3516
3517
3518 Strain fitness (log2 ratio)
-1
0
1 at 3515.431 kb on - strand, within Shew_2962 at 3515.503 kb on - strand, within Shew_2962 at 3515.817 kb on + strand at 3516.053 kb on + strand, within Shew_2963 at 3516.181 kb on - strand, within Shew_2963 at 3516.580 kb on - strand, within Shew_2964 at 3516.604 kb on + strand, within Shew_2964 at 3516.635 kb on - strand, within Shew_2964 at 3516.766 kb on - strand, within Shew_2964 at 3517.115 kb on - strand, within Shew_2964 at 3517.425 kb on - strand, within Shew_2964 at 3517.839 kb on - strand, within Shew_2965 at 3517.882 kb on + strand, within Shew_2965 at 3517.882 kb on + strand, within Shew_2965 at 3517.888 kb on + strand, within Shew_2965 at 3517.888 kb on + strand, within Shew_2965 at 3517.896 kb on - strand, within Shew_2965 at 3517.959 kb on - strand, within Shew_2965 at 3517.997 kb on - strand, within Shew_2965 at 3518.039 kb on + strand, within Shew_2965 at 3518.179 kb on + strand, within Shew_2965 at 3518.218 kb on + strand, within Shew_2965 at 3518.516 kb on - strand, within Shew_2965 at 3518.537 kb on - strand, within Shew_2965
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 3,515,431 - Shew_2962 0.86 -0.8 3,515,503 - Shew_2962 0.90 +1.2 3,515,817 + -0.1 3,516,053 + Shew_2963 0.37 +0.7 3,516,181 - Shew_2963 0.64 -0.2 3,516,580 - Shew_2964 0.15 +0.7 3,516,604 + Shew_2964 0.18 +0.1 3,516,635 - Shew_2964 0.20 +0.1 3,516,766 - Shew_2964 0.32 +0.7 3,517,115 - Shew_2964 0.62 +0.6 3,517,425 - Shew_2964 0.89 +0.2 3,517,839 - Shew_2965 0.21 -0.0 3,517,882 + Shew_2965 0.25 -1.2 3,517,882 + Shew_2965 0.25 +0.2 3,517,888 + Shew_2965 0.25 +0.5 3,517,888 + Shew_2965 0.25 -0.2 3,517,896 - Shew_2965 0.26 +0.2 3,517,959 - Shew_2965 0.31 +0.3 3,517,997 - Shew_2965 0.34 -0.2 3,518,039 + Shew_2965 0.37 +0.5 3,518,179 + Shew_2965 0.48 +0.2 3,518,218 + Shew_2965 0.51 +0.2 3,518,516 - Shew_2965 0.75 +0.3 3,518,537 - Shew_2965 0.76 +0.6
Or see this region's nucleotide sequence