Strain Fitness in Shewanella loihica PV-4 around Shew_1612

Experiment: Polymyxin B sulfate 20 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsbcB and Shew_1612 are separated by 128 nucleotidesShew_1612 and rrmA are separated by 35 nucleotides Shew_1611: sbcB - exonuclease I (RefSeq), at 1,842,682 to 1,844,130 sbcB Shew_1612: Shew_1612 - hypothetical protein (RefSeq), at 1,844,259 to 1,845,077 _1612 Shew_1613: rrmA - 23S rRNA methyltransferase A (RefSeq), at 1,845,113 to 1,845,925 rrmA Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -3 -2 -1 0 1at 1843.642 kb on + strand, within sbcBat 1843.642 kb on + strand, within sbcBat 1844.055 kb on - strandat 1844.096 kb on + strandat 1844.096 kb on + strandat 1844.104 kb on - strandat 1844.132 kb on + strandat 1844.269 kb on - strandat 1845.067 kb on - strandat 1845.379 kb on + strand, within rrmAat 1845.875 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
remove
1,843,642 + sbcB Shew_1611 0.66 -2.9
1,843,642 + sbcB Shew_1611 0.66 -3.4
1,844,055 - -1.4
1,844,096 + -1.0
1,844,096 + -2.4
1,844,104 - -1.4
1,844,132 + -0.8
1,844,269 - +0.6
1,845,067 - +0.9
1,845,379 + rrmA Shew_1613 0.33 +0.5
1,845,875 + +0.5

Or see this region's nucleotide sequence