Strain Fitness in Shewanella loihica PV-4 around Shew_1583

Experiment: Polymyxin B sulfate 20 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1582 and yebU are separated by 351 nucleotidesyebU and Shew_1584 are separated by 88 nucleotides Shew_1582: Shew_1582 - TatD family hydrolase (RefSeq), at 1,811,190 to 1,811,978 _1582 Shew_1583: yebU - rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq), at 1,812,330 to 1,813,790 yebU Shew_1584: Shew_1584 - nucleoside recognition domain-containing protein (RefSeq), at 1,813,879 to 1,815,105 _1584 Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -1 0 1at 1811.360 kb on - strand, within Shew_1582at 1811.945 kb on + strandat 1811.953 kb on - strandat 1812.714 kb on - strand, within yebUat 1813.303 kb on + strand, within yebUat 1813.992 kb on - strandat 1814.053 kb on + strand, within Shew_1584at 1814.327 kb on + strand, within Shew_1584at 1814.335 kb on - strand, within Shew_1584

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
remove
1,811,360 - Shew_1582 0.22 +0.0
1,811,945 + +0.2
1,811,953 - +0.3
1,812,714 - yebU Shew_1583 0.26 +0.5
1,813,303 + yebU Shew_1583 0.67 +1.5
1,813,992 - +0.1
1,814,053 + Shew_1584 0.14 +0.7
1,814,327 + Shew_1584 0.37 -0.6
1,814,335 - Shew_1584 0.37 -0.0

Or see this region's nucleotide sequence