Strain Fitness in Shewanella loihica PV-4 around Shew_1379

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1377 and fliR are separated by 42 nucleotidesfliR and flhB overlap by 1 nucleotidesflhB and flhA are separated by 152 nucleotides Shew_1377: Shew_1377 - flagellar biosynthetic protein FliQ (RefSeq), at 1,585,924 to 1,586,193 _1377 Shew_1378: fliR - flagellar biosynthesis protein FliR (RefSeq), at 1,586,236 to 1,587,033 fliR Shew_1379: flhB - flagellar biosynthesis protein FlhB (RefSeq), at 1,587,033 to 1,588,166 flhB Shew_1380: flhA - flagellar biosynthesis protein FlhA (RefSeq), at 1,588,319 to 1,590,418 flhA Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -2 -1 0 1at 1587.009 kb on + strandat 1587.064 kb on - strandat 1587.267 kb on - strand, within flhBat 1587.565 kb on - strand, within flhBat 1587.841 kb on + strand, within flhBat 1588.613 kb on + strand, within flhAat 1588.758 kb on + strand, within flhA

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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1,587,009 + +0.3
1,587,064 - -1.3
1,587,267 - flhB Shew_1379 0.21 -2.0
1,587,565 - flhB Shew_1379 0.47 -2.0
1,587,841 + flhB Shew_1379 0.71 -0.6
1,588,613 + flhA Shew_1380 0.14 -2.2
1,588,758 + flhA Shew_1380 0.21 -0.7

Or see this region's nucleotide sequence