Strain Fitness in Shewanella loihica PV-4 around Shew_0330

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0328 and Shew_0329 are separated by 262 nucleotidesShew_0329 and Shew_0330 are separated by 17 nucleotidesShew_0330 and prmA are separated by 151 nucleotides Shew_0328: Shew_0328 - hypothetical protein (RefSeq), at 373,429 to 374,145 _0328 Shew_0329: Shew_0329 - Fis family transcriptional regulator (RefSeq), at 374,408 to 374,713 _0329 Shew_0330: Shew_0330 - nifR3 family TIM-barrel protein (RefSeq), at 374,731 to 375,699 _0330 Shew_0331: prmA - ribosomal protein L11 methyltransferase (RefSeq), at 375,851 to 376,732 prmA Position (kb) 374 375 376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 374.191 kb on + strandat 374.191 kb on + strandat 374.199 kb on - strandat 375.198 kb on - strand, within Shew_0330at 375.718 kb on + strandat 376.177 kb on - strand, within prmAat 376.548 kb on + strand, within prmAat 376.608 kb on - strand, within prmAat 376.641 kb on - strand, within prmA

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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374,191 + +0.4
374,191 + +0.5
374,199 - +0.1
375,198 - Shew_0330 0.48 -4.0
375,718 + -1.1
376,177 - prmA Shew_0331 0.37 -0.1
376,548 + prmA Shew_0331 0.79 -0.2
376,608 - prmA Shew_0331 0.86 +0.0
376,641 - prmA Shew_0331 0.90 -2.0

Or see this region's nucleotide sequence