Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0243 and Shew_0244 are separated by 548 nucleotides Shew_0244 and Shew_0245 are separated by 9 nucleotides
Shew_0243: Shew_0243 - LysR family transcriptional regulator (RefSeq), at 260,264 to 261,229
_0243
Shew_0244: Shew_0244 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 261,778 to 262,473
_0244
Shew_0245: Shew_0245 - molydopterin dinucleotide-binding region (RefSeq), at 262,483 to 265,521
_0245
Position (kb) 261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 260.893 kb on + strand, within Shew_0243 at 260.953 kb on + strand, within Shew_0243 at 260.962 kb on - strand, within Shew_0243 at 260.998 kb on + strand, within Shew_0243 at 261.022 kb on + strand, within Shew_0243 at 261.038 kb on - strand, within Shew_0243 at 261.057 kb on - strand, within Shew_0243 at 261.077 kb on + strand, within Shew_0243 at 261.098 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.106 kb on + strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.120 kb on + strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.127 kb on + strand, within Shew_0243 at 261.127 kb on + strand, within Shew_0243 at 261.127 kb on + strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.129 kb on + strand, within Shew_0243 at 261.135 kb on - strand at 261.135 kb on - strand at 261.135 kb on - strand at 261.142 kb on - strand at 261.147 kb on - strand at 261.147 kb on - strand at 261.147 kb on - strand at 261.151 kb on + strand at 261.151 kb on + strand at 261.151 kb on + strand at 261.153 kb on + strand at 261.158 kb on + strand at 261.159 kb on - strand at 261.159 kb on + strand at 261.159 kb on - strand at 261.159 kb on - strand at 261.166 kb on - strand at 261.172 kb on + strand at 261.177 kb on - strand at 261.180 kb on + strand at 261.188 kb on - strand at 261.188 kb on - strand at 261.190 kb on - strand at 261.190 kb on + strand at 261.204 kb on + strand at 261.214 kb on + strand at 261.227 kb on - strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.239 kb on - strand at 261.239 kb on - strand at 261.239 kb on - strand at 261.241 kb on + strand at 261.284 kb on - strand at 261.402 kb on - strand at 261.403 kb on - strand at 261.404 kb on + strand at 261.418 kb on - strand at 261.426 kb on - strand at 261.441 kb on - strand at 261.443 kb on + strand at 261.443 kb on + strand at 261.443 kb on + strand at 261.444 kb on + strand at 261.444 kb on + strand at 261.444 kb on + strand at 261.445 kb on + strand at 261.450 kb on + strand at 261.450 kb on + strand at 261.451 kb on - strand at 261.452 kb on - strand at 261.456 kb on + strand at 261.456 kb on + strand at 261.457 kb on - strand at 261.457 kb on - strand at 261.458 kb on - strand at 261.458 kb on - strand at 261.458 kb on - strand at 261.458 kb on - strand at 261.471 kb on + strand at 261.477 kb on + strand at 261.494 kb on + strand at 261.502 kb on - strand at 261.504 kb on - strand at 261.588 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.774 kb on + strand at 261.780 kb on - strand at 261.786 kb on - strand at 261.786 kb on - strand at 261.823 kb on - strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.828 kb on - strand at 261.828 kb on - strand at 261.833 kb on - strand at 261.833 kb on - strand at 261.842 kb on - strand at 261.850 kb on - strand, within Shew_0244 at 261.863 kb on + strand, within Shew_0244 at 261.871 kb on - strand, within Shew_0244 at 261.878 kb on + strand, within Shew_0244 at 261.880 kb on + strand, within Shew_0244 at 261.888 kb on + strand, within Shew_0244 at 261.893 kb on + strand, within Shew_0244 at 261.894 kb on - strand, within Shew_0244 at 261.992 kb on + strand, within Shew_0244 at 262.006 kb on - strand, within Shew_0244 at 262.037 kb on + strand, within Shew_0244 at 262.079 kb on - strand, within Shew_0244 at 262.084 kb on - strand, within Shew_0244 at 262.084 kb on - strand, within Shew_0244 at 262.098 kb on - strand, within Shew_0244 at 262.112 kb on + strand, within Shew_0244 at 262.247 kb on + strand, within Shew_0244 at 262.255 kb on - strand, within Shew_0244 at 262.356 kb on + strand, within Shew_0244 at 262.364 kb on - strand, within Shew_0244 at 262.429 kb on + strand at 262.723 kb on - strand at 262.951 kb on + strand, within Shew_0245 at 262.993 kb on - strand, within Shew_0245 at 263.142 kb on - strand, within Shew_0245 at 263.144 kb on - strand, within Shew_0245 at 263.190 kb on + strand, within Shew_0245 at 263.201 kb on + strand, within Shew_0245 at 263.259 kb on - strand, within Shew_0245 at 263.336 kb on - strand, within Shew_0245 at 263.362 kb on + strand, within Shew_0245 at 263.396 kb on + strand, within Shew_0245
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 260,893 + Shew_0243 0.65 +0.1 260,953 + Shew_0243 0.71 +0.5 260,962 - Shew_0243 0.72 +0.5 260,998 + Shew_0243 0.76 -0.2 261,022 + Shew_0243 0.78 +0.5 261,038 - Shew_0243 0.80 -0.5 261,057 - Shew_0243 0.82 -0.0 261,077 + Shew_0243 0.84 -1.5 261,098 + Shew_0243 0.86 -0.4 261,100 + Shew_0243 0.87 +0.3 261,100 + Shew_0243 0.87 +0.1 261,100 + Shew_0243 0.87 +0.2 261,100 + Shew_0243 0.87 -1.2 261,100 + Shew_0243 0.87 +0.2 261,100 + Shew_0243 0.87 +0.2 261,100 + Shew_0243 0.87 -0.1 261,100 + Shew_0243 0.87 +0.6 261,100 + Shew_0243 0.87 +1.3 261,100 + Shew_0243 0.87 +0.8 261,106 + Shew_0243 0.87 -0.3 261,108 - Shew_0243 0.87 +0.7 261,108 - Shew_0243 0.87 +0.0 261,108 - Shew_0243 0.87 -1.5 261,108 - Shew_0243 0.87 -0.6 261,108 - Shew_0243 0.87 -2.0 261,108 - Shew_0243 0.87 +0.6 261,108 - Shew_0243 0.87 +0.2 261,108 - Shew_0243 0.87 +0.2 261,108 - Shew_0243 0.87 +0.4 261,108 - Shew_0243 0.87 +0.5 261,108 - Shew_0243 0.87 +2.1 261,113 + Shew_0243 0.88 +0.3 261,113 + Shew_0243 0.88 -0.6 261,113 + Shew_0243 0.88 -0.3 261,113 + Shew_0243 0.88 +0.8 261,113 + Shew_0243 0.88 +0.4 261,113 + Shew_0243 0.88 +0.1 261,113 + Shew_0243 0.88 +0.6 261,113 + Shew_0243 0.88 -0.8 261,113 + Shew_0243 0.88 +0.4 261,113 + Shew_0243 0.88 -0.2 261,113 + Shew_0243 0.88 +0.1 261,113 + Shew_0243 0.88 -0.3 261,113 + Shew_0243 0.88 +0.1 261,113 + Shew_0243 0.88 +0.3 261,120 + Shew_0243 0.89 +0.0 261,121 - Shew_0243 0.89 +0.0 261,121 - Shew_0243 0.89 +0.7 261,121 - Shew_0243 0.89 +0.0 261,121 - Shew_0243 0.89 -0.1 261,121 - Shew_0243 0.89 +0.3 261,121 - Shew_0243 0.89 -1.5 261,121 - Shew_0243 0.89 -0.1 261,121 - Shew_0243 0.89 +0.2 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 +0.2 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 +0.0 261,121 - Shew_0243 0.89 -0.5 261,121 - Shew_0243 0.89 +0.7 261,121 - Shew_0243 0.89 +0.3 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 +0.4 261,121 - Shew_0243 0.89 -0.2 261,121 - Shew_0243 0.89 -0.2 261,121 - Shew_0243 0.89 +1.9 261,121 - Shew_0243 0.89 -2.0 261,121 - Shew_0243 0.89 -1.1 261,121 - Shew_0243 0.89 -0.0 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 +0.3 261,121 - Shew_0243 0.89 -0.1 261,127 + Shew_0243 0.89 -0.2 261,127 + Shew_0243 0.89 -1.5 261,127 + Shew_0243 0.89 +0.5 261,128 - Shew_0243 0.89 +0.4 261,128 - Shew_0243 0.89 -0.4 261,128 - Shew_0243 0.89 +0.7 261,128 - Shew_0243 0.89 +0.3 261,128 - Shew_0243 0.89 +1.0 261,129 + Shew_0243 0.90 +0.3 261,135 - -1.8 261,135 - +0.6 261,135 - +0.4 261,142 - +1.1 261,147 - +2.6 261,147 - +0.1 261,147 - +0.0 261,151 + +0.6 261,151 + -0.6 261,151 + +0.3 261,153 + +1.6 261,158 + -2.8 261,159 - -2.7 261,159 + +1.0 261,159 - -1.4 261,159 - -0.0 261,166 - -3.7 261,172 + +0.5 261,177 - -0.5 261,180 + -0.5 261,188 - +0.2 261,188 - +0.3 261,190 - -0.3 261,190 + -0.6 261,204 + +0.9 261,214 + +0.5 261,227 - +0.4 261,231 + -1.3 261,231 + -0.1 261,231 + +1.0 261,231 + +0.0 261,231 + +0.6 261,231 + -0.4 261,231 + +0.0 261,239 - +2.3 261,239 - -0.6 261,239 - -0.5 261,241 + -0.1 261,284 - -0.0 261,402 - +0.7 261,403 - -0.4 261,404 + +1.0 261,418 - +0.5 261,426 - -0.5 261,441 - -1.4 261,443 + -0.6 261,443 + -2.7 261,443 + +0.2 261,444 + -0.1 261,444 + -0.2 261,444 + -0.8 261,445 + +0.4 261,450 + -0.4 261,450 + -2.0 261,451 - +0.7 261,452 - +0.3 261,456 + -0.0 261,456 + -0.5 261,457 - -2.3 261,457 - +0.2 261,458 - +0.1 261,458 - +0.2 261,458 - -0.1 261,458 - -1.0 261,471 + +1.8 261,477 + -0.3 261,494 + -0.8 261,502 - -2.6 261,504 - -0.0 261,588 + +0.4 261,670 + +0.4 261,670 + -1.1 261,670 + -0.1 261,670 + -0.2 261,774 + +0.1 261,780 - -0.0 261,786 - -0.6 261,786 - -0.3 261,823 - +0.5 261,825 + +0.7 261,825 + -0.7 261,825 + -0.6 261,825 + +0.3 261,828 - +2.1 261,828 - +0.1 261,833 - +1.0 261,833 - -0.8 261,842 - +0.2 261,850 - Shew_0244 0.10 +0.2 261,863 + Shew_0244 0.12 -0.2 261,871 - Shew_0244 0.13 +0.3 261,878 + Shew_0244 0.14 -0.1 261,880 + Shew_0244 0.15 -0.0 261,888 + Shew_0244 0.16 -0.0 261,893 + Shew_0244 0.17 -0.2 261,894 - Shew_0244 0.17 +0.3 261,992 + Shew_0244 0.31 +0.3 262,006 - Shew_0244 0.33 -0.1 262,037 + Shew_0244 0.37 -0.7 262,079 - Shew_0244 0.43 -1.6 262,084 - Shew_0244 0.44 -1.2 262,084 - Shew_0244 0.44 +0.0 262,098 - Shew_0244 0.46 +0.2 262,112 + Shew_0244 0.48 -0.1 262,247 + Shew_0244 0.67 -2.8 262,255 - Shew_0244 0.69 +0.4 262,356 + Shew_0244 0.83 +0.9 262,364 - Shew_0244 0.84 +0.1 262,429 + +0.8 262,723 - +1.3 262,951 + Shew_0245 0.15 -0.5 262,993 - Shew_0245 0.17 +0.3 263,142 - Shew_0245 0.22 +0.1 263,144 - Shew_0245 0.22 -0.4 263,190 + Shew_0245 0.23 +0.1 263,201 + Shew_0245 0.24 +0.4 263,259 - Shew_0245 0.26 +0.1 263,336 - Shew_0245 0.28 +0.4 263,362 + Shew_0245 0.29 +0.2 263,396 + Shew_0245 0.30 +0.3
Or see this region's nucleotide sequence