Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0236 and Shew_0237 are separated by 10 nucleotides Shew_0237 and Shew_0238 are separated by 75 nucleotides
Shew_0236: Shew_0236 - LysR family transcriptional regulator (RefSeq), at 251,517 to 252,434
_0236
Shew_0237: Shew_0237 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 252,445 to 254,343
_0237
Shew_0238: Shew_0238 - porin (RefSeq), at 254,419 to 255,507
_0238
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -2
-1
0
1 at 251.742 kb on + strand, within Shew_0236 at 251.760 kb on - strand, within Shew_0236 at 252.100 kb on + strand, within Shew_0236 at 252.182 kb on + strand, within Shew_0236 at 252.243 kb on - strand, within Shew_0236 at 252.691 kb on + strand, within Shew_0237 at 252.702 kb on + strand, within Shew_0237 at 252.987 kb on + strand, within Shew_0237 at 253.048 kb on - strand, within Shew_0237 at 253.053 kb on - strand, within Shew_0237 at 253.224 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.413 kb on - strand, within Shew_0237 at 253.444 kb on + strand, within Shew_0237 at 253.539 kb on + strand, within Shew_0237 at 253.588 kb on - strand, within Shew_0237 at 253.720 kb on - strand, within Shew_0237 at 253.901 kb on + strand, within Shew_0237 at 253.934 kb on + strand, within Shew_0237 at 254.074 kb on - strand, within Shew_0237 at 254.226 kb on + strand at 254.378 kb on + strand at 254.383 kb on + strand at 254.401 kb on - strand at 254.401 kb on - strand at 254.612 kb on + strand, within Shew_0238 at 254.661 kb on - strand, within Shew_0238 at 254.778 kb on - strand, within Shew_0238 at 254.782 kb on + strand, within Shew_0238 at 254.825 kb on - strand, within Shew_0238 at 254.859 kb on + strand, within Shew_0238 at 254.869 kb on + strand, within Shew_0238
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 251,742 + Shew_0236 0.25 +0.1 251,760 - Shew_0236 0.26 +0.0 252,100 + Shew_0236 0.64 -2.6 252,182 + Shew_0236 0.72 -0.4 252,243 - Shew_0236 0.79 -0.6 252,691 + Shew_0237 0.13 +0.3 252,702 + Shew_0237 0.14 +0.1 252,987 + Shew_0237 0.29 -0.0 253,048 - Shew_0237 0.32 +0.3 253,053 - Shew_0237 0.32 +0.7 253,224 - Shew_0237 0.41 +1.6 253,396 - Shew_0237 0.50 -0.5 253,396 - Shew_0237 0.50 +0.6 253,396 - Shew_0237 0.50 +0.2 253,413 - Shew_0237 0.51 -0.8 253,444 + Shew_0237 0.53 +0.4 253,539 + Shew_0237 0.58 +0.9 253,588 - Shew_0237 0.60 +0.1 253,720 - Shew_0237 0.67 +0.0 253,901 + Shew_0237 0.77 +0.4 253,934 + Shew_0237 0.78 +0.2 254,074 - Shew_0237 0.86 -0.1 254,226 + +0.2 254,378 + +0.3 254,383 + +0.6 254,401 - +0.0 254,401 - +0.1 254,612 + Shew_0238 0.18 +0.6 254,661 - Shew_0238 0.22 -0.6 254,778 - Shew_0238 0.33 -0.4 254,782 + Shew_0238 0.33 +0.1 254,825 - Shew_0238 0.37 -1.5 254,859 + Shew_0238 0.40 +0.2 254,869 + Shew_0238 0.41 +0.8
Or see this region's nucleotide sequence