Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0235 and Shew_0236 are separated by 117 nucleotides Shew_0236 and Shew_0237 are separated by 10 nucleotides
Shew_0235: Shew_0235 - isochorismatase hydrolase (RefSeq), at 250,449 to 251,399
_0235
Shew_0236: Shew_0236 - LysR family transcriptional regulator (RefSeq), at 251,517 to 252,434
_0236
Shew_0237: Shew_0237 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 252,445 to 254,343
_0237
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 250.659 kb on + strand, within Shew_0235 at 250.659 kb on + strand, within Shew_0235 at 250.662 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.936 kb on + strand, within Shew_0235 at 251.742 kb on + strand, within Shew_0236 at 251.760 kb on - strand, within Shew_0236 at 252.100 kb on + strand, within Shew_0236 at 252.182 kb on + strand, within Shew_0236 at 252.243 kb on - strand, within Shew_0236 at 252.691 kb on + strand, within Shew_0237 at 252.702 kb on + strand, within Shew_0237 at 252.987 kb on + strand, within Shew_0237 at 253.048 kb on - strand, within Shew_0237 at 253.053 kb on - strand, within Shew_0237 at 253.224 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.413 kb on - strand, within Shew_0237
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 250,659 + Shew_0235 0.22 +0.3 250,659 + Shew_0235 0.22 +0.3 250,662 - Shew_0235 0.22 +0.2 250,667 - Shew_0235 0.23 +0.7 250,667 - Shew_0235 0.23 -0.2 250,936 + Shew_0235 0.51 -0.2 251,742 + Shew_0236 0.25 +0.1 251,760 - Shew_0236 0.26 +0.0 252,100 + Shew_0236 0.64 -2.6 252,182 + Shew_0236 0.72 -0.4 252,243 - Shew_0236 0.79 -0.6 252,691 + Shew_0237 0.13 +0.3 252,702 + Shew_0237 0.14 +0.1 252,987 + Shew_0237 0.29 -0.0 253,048 - Shew_0237 0.32 +0.3 253,053 - Shew_0237 0.32 +0.7 253,224 - Shew_0237 0.41 +1.6 253,396 - Shew_0237 0.50 -0.5 253,396 - Shew_0237 0.50 +0.6 253,396 - Shew_0237 0.50 +0.2 253,413 - Shew_0237 0.51 -0.8
Or see this region's nucleotide sequence