Strain Fitness in Shewanella loihica PV-4 around Shew_0213

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0212 and Shew_0213 are separated by 215 nucleotidesShew_0213 and Shew_0214 are separated by 15 nucleotides Shew_0212: Shew_0212 - type IV pilus secretin PilQ (RefSeq), at 226,517 to 228,568 _0212 Shew_0213: Shew_0213 - shikimate kinase I (RefSeq), at 228,784 to 229,299 _0213 Shew_0214: Shew_0214 - 3-dehydroquinate synthase (RefSeq), at 229,315 to 230,391 _0214 Position (kb) 228 229 230Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 227.829 kb on + strand, within Shew_0212at 227.920 kb on - strand, within Shew_0212at 227.938 kb on - strand, within Shew_0212at 228.099 kb on - strand, within Shew_0212at 228.256 kb on - strand, within Shew_0212at 228.307 kb on + strand, within Shew_0212at 228.315 kb on - strand, within Shew_0212at 228.329 kb on - strand, within Shew_0212at 228.366 kb on + strandat 228.381 kb on - strandat 228.552 kb on + strandat 229.593 kb on - strand, within Shew_0214at 229.767 kb on + strand, within Shew_0214at 229.775 kb on - strand, within Shew_0214at 229.827 kb on - strand, within Shew_0214at 229.915 kb on - strand, within Shew_0214at 229.991 kb on - strand, within Shew_0214at 230.060 kb on - strand, within Shew_0214

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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227,829 + Shew_0212 0.64 -0.3
227,920 - Shew_0212 0.68 +0.9
227,938 - Shew_0212 0.69 +0.6
228,099 - Shew_0212 0.77 +0.9
228,256 - Shew_0212 0.85 -1.1
228,307 + Shew_0212 0.87 -0.0
228,315 - Shew_0212 0.88 -1.6
228,329 - Shew_0212 0.88 +0.1
228,366 + +0.4
228,381 - -1.3
228,552 + +0.0
229,593 - Shew_0214 0.26 -2.8
229,767 + Shew_0214 0.42 -2.8
229,775 - Shew_0214 0.43 -4.1
229,827 - Shew_0214 0.48 -2.8
229,915 - Shew_0214 0.56 -3.0
229,991 - Shew_0214 0.63 -2.8
230,060 - Shew_0214 0.69 +0.4

Or see this region's nucleotide sequence