Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0081 and Shew_0082 are separated by 52 nucleotides Shew_0082 and Shew_0083 are separated by 134 nucleotides Shew_0083 and Shew_0084 are separated by 81 nucleotides Shew_0084 and Shew_0085 are separated by 75 nucleotides
Shew_0081: Shew_0081 - two component transcriptional regulator (RefSeq), at 94,873 to 95,607
_0081
Shew_0082: Shew_0082 - hypothetical protein (RefSeq), at 95,660 to 96,109
_0082
Shew_0083: Shew_0083 - MOSC domain-containing protein (RefSeq), at 96,244 to 96,936
_0083
Shew_0084: Shew_0084 - hypothetical protein (RefSeq), at 97,018 to 97,338
_0084
Shew_0085: Shew_0085 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 97,414 to 99,330
_0085
Position (kb) 96
97 Strain fitness (log2 ratio) -1
0
1 at 95.439 kb on + strand, within Shew_0081 at 95.887 kb on + strand, within Shew_0082 at 95.890 kb on - strand, within Shew_0082 at 95.948 kb on - strand, within Shew_0082 at 96.087 kb on - strand at 96.187 kb on - strand at 96.371 kb on - strand, within Shew_0083 at 96.658 kb on + strand, within Shew_0083 at 96.747 kb on - strand, within Shew_0083 at 96.763 kb on - strand, within Shew_0083 at 96.805 kb on - strand, within Shew_0083 at 97.217 kb on + strand, within Shew_0084 at 97.410 kb on - strand at 97.420 kb on - strand at 97.499 kb on - strand at 97.644 kb on + strand, within Shew_0085 at 97.644 kb on + strand, within Shew_0085 at 97.652 kb on - strand, within Shew_0085 at 97.833 kb on - strand, within Shew_0085 at 97.901 kb on + strand, within Shew_0085
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 95,439 + Shew_0081 0.77 +1.2 95,887 + Shew_0082 0.50 +0.9 95,890 - Shew_0082 0.51 +0.6 95,948 - Shew_0082 0.64 +0.8 96,087 - +0.9 96,187 - +1.1 96,371 - Shew_0083 0.18 +0.3 96,658 + Shew_0083 0.60 +0.1 96,747 - Shew_0083 0.73 -0.3 96,763 - Shew_0083 0.75 +0.5 96,805 - Shew_0083 0.81 +0.2 97,217 + Shew_0084 0.62 +0.1 97,410 - +0.6 97,420 - -0.4 97,499 - +0.4 97,644 + Shew_0085 0.12 -0.2 97,644 + Shew_0085 0.12 -0.4 97,652 - Shew_0085 0.12 +0.1 97,833 - Shew_0085 0.22 +0.3 97,901 + Shew_0085 0.25 -0.3
Or see this region's nucleotide sequence