Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_902

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_902 and Pf6N2E2_903 are separated by 168 nucleotides Pf6N2E2_902 - hypothetical protein, at 1,056,213 to 1,056,362 _902 Pf6N2E2_903 - hypothetical protein, at 1,056,531 to 1,056,650 _903 Position (kb) 1056 1057Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1055.256 kb on - strandat 1055.355 kb on - strandat 1055.405 kb on - strandat 1055.405 kb on - strandat 1055.418 kb on + strandat 1055.429 kb on + strandat 1055.432 kb on + strandat 1055.590 kb on - strandat 1055.681 kb on + strandat 1055.681 kb on + strandat 1055.689 kb on - strandat 1055.846 kb on + strandat 1055.846 kb on + strandat 1055.860 kb on + strandat 1055.861 kb on - strandat 1055.941 kb on + strandat 1055.941 kb on + strandat 1055.942 kb on - strandat 1055.942 kb on - strandat 1055.942 kb on - strandat 1056.101 kb on - strandat 1056.253 kb on + strand, within Pf6N2E2_902at 1056.253 kb on + strand, within Pf6N2E2_902at 1056.257 kb on - strand, within Pf6N2E2_902at 1056.411 kb on + strandat 1056.412 kb on - strandat 1056.493 kb on + strandat 1056.493 kb on + strandat 1056.494 kb on - strandat 1056.499 kb on + strandat 1056.812 kb on - strandat 1056.812 kb on - strandat 1056.812 kb on - strandat 1056.953 kb on + strandat 1056.953 kb on + strandat 1056.953 kb on + strandat 1056.953 kb on + strandat 1056.954 kb on - strandat 1056.954 kb on - strandat 1056.954 kb on - strandat 1056.954 kb on - strandat 1056.969 kb on + strandat 1056.969 kb on + strandat 1056.969 kb on + strandat 1056.969 kb on + strandat 1056.969 kb on + strandat 1056.969 kb on + strandat 1056.970 kb on - strandat 1056.970 kb on - strandat 1056.970 kb on - strandat 1056.970 kb on - strandat 1056.970 kb on - strandat 1056.970 kb on - strandat 1056.970 kb on - strandat 1056.970 kb on - strandat 1057.033 kb on + strandat 1057.034 kb on - strandat 1057.034 kb on - strandat 1057.063 kb on - strandat 1057.072 kb on + strandat 1057.073 kb on - strandat 1057.085 kb on + strandat 1057.085 kb on + strandat 1057.085 kb on + strandat 1057.085 kb on + strandat 1057.086 kb on - strandat 1057.086 kb on - strandat 1057.086 kb on - strandat 1057.086 kb on - strandat 1057.089 kb on + strandat 1057.094 kb on + strandat 1057.103 kb on + strandat 1057.103 kb on + strandat 1057.104 kb on - strandat 1057.164 kb on + strandat 1057.164 kb on + strandat 1057.192 kb on + strandat 1057.192 kb on + strandat 1057.192 kb on + strandat 1057.192 kb on + strandat 1057.192 kb on + strandat 1057.192 kb on + strandat 1057.192 kb on + strandat 1057.193 kb on - strandat 1057.193 kb on - strandat 1057.193 kb on - strandat 1057.193 kb on - strandat 1057.193 kb on - strandat 1057.224 kb on - strandat 1057.224 kb on - strandat 1057.224 kb on - strandat 1057.241 kb on + strandat 1057.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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1,055,256 - +0.9
1,055,355 - -0.9
1,055,405 - +1.2
1,055,405 - -1.4
1,055,418 + +0.3
1,055,429 + +0.2
1,055,432 + +1.3
1,055,590 - +0.9
1,055,681 + +0.8
1,055,681 + -0.3
1,055,689 - -1.9
1,055,846 + +0.7
1,055,846 + +2.0
1,055,860 + +0.4
1,055,861 - -0.3
1,055,941 + +1.6
1,055,941 + -1.1
1,055,942 - +0.1
1,055,942 - +0.4
1,055,942 - -1.9
1,056,101 - -0.7
1,056,253 + Pf6N2E2_902 0.27 -0.8
1,056,253 + Pf6N2E2_902 0.27 -0.3
1,056,257 - Pf6N2E2_902 0.29 -2.5
1,056,411 + +1.0
1,056,412 - +1.0
1,056,493 + +0.5
1,056,493 + -0.6
1,056,494 - +0.5
1,056,499 + -0.9
1,056,812 - +0.5
1,056,812 - -0.9
1,056,812 - -0.4
1,056,953 + +0.6
1,056,953 + -0.1
1,056,953 + -0.9
1,056,953 + +0.9
1,056,954 - +0.8
1,056,954 - +0.6
1,056,954 - +0.4
1,056,954 - +0.6
1,056,969 + -0.4
1,056,969 + -1.1
1,056,969 + -0.2
1,056,969 + -0.5
1,056,969 + +0.4
1,056,969 + -0.0
1,056,970 - -0.7
1,056,970 - -1.9
1,056,970 - +0.2
1,056,970 - +1.5
1,056,970 - +0.9
1,056,970 - +0.2
1,056,970 - -1.4
1,056,970 - -2.9
1,057,033 + -1.5
1,057,034 - -0.5
1,057,034 - +0.0
1,057,063 - +0.4
1,057,072 + -0.0
1,057,073 - +1.2
1,057,085 + -0.9
1,057,085 + +0.5
1,057,085 + -0.4
1,057,085 + +2.8
1,057,086 - -0.1
1,057,086 - +0.2
1,057,086 - -0.1
1,057,086 - -0.5
1,057,089 + -0.7
1,057,094 + -0.1
1,057,103 + -1.1
1,057,103 + +1.0
1,057,104 - -0.7
1,057,164 + +1.1
1,057,164 + -0.8
1,057,192 + +0.3
1,057,192 + +0.6
1,057,192 + -0.6
1,057,192 + +0.8
1,057,192 + +1.4
1,057,192 + +2.2
1,057,192 + -0.4
1,057,193 - +1.3
1,057,193 - +2.3
1,057,193 - -0.1
1,057,193 - +0.1
1,057,193 - +0.2
1,057,224 - +0.2
1,057,224 - -1.2
1,057,224 - +1.3
1,057,241 + -0.8
1,057,362 - -0.6

Or see this region's nucleotide sequence