Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_81 and Pf6N2E2_82 are separated by 249 nucleotides Pf6N2E2_82 and Pf6N2E2_83 are separated by 361 nucleotides
Pf6N2E2_81 - hypothetical protein, at 126,543 to 126,749
_81
Pf6N2E2_82 - hypothetical protein, at 126,999 to 127,151
_82
Pf6N2E2_83 - transcriptional regulator, AraC family, at 127,513 to 128,382
_83
Position (kb)
126
127 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 125.592 kb on + strand at 125.592 kb on + strand at 125.592 kb on + strand at 125.592 kb on + strand at 125.592 kb on + strand at 125.592 kb on + strand at 125.593 kb on - strand at 125.628 kb on + strand at 125.629 kb on - strand at 125.629 kb on - strand at 125.742 kb on + strand at 125.742 kb on + strand at 125.749 kb on + strand at 125.749 kb on + strand at 125.749 kb on + strand at 125.749 kb on + strand at 125.749 kb on + strand at 125.749 kb on + strand at 125.750 kb on - strand at 125.782 kb on + strand at 125.783 kb on - strand at 125.783 kb on - strand at 125.783 kb on - strand at 125.783 kb on - strand at 125.844 kb on - strand at 125.905 kb on + strand at 125.905 kb on + strand at 125.929 kb on + strand at 126.012 kb on + strand at 126.193 kb on + strand at 126.193 kb on + strand at 126.194 kb on - strand at 126.276 kb on - strand at 126.372 kb on - strand at 126.388 kb on - strand at 126.388 kb on - strand at 126.394 kb on - strand at 126.394 kb on - strand at 126.394 kb on - strand at 126.394 kb on - strand at 126.424 kb on + strand at 126.470 kb on + strand at 126.553 kb on - strand at 126.569 kb on - strand, within Pf6N2E2_81 at 126.569 kb on - strand, within Pf6N2E2_81 at 126.693 kb on - strand, within Pf6N2E2_81 at 126.747 kb on + strand at 126.748 kb on - strand at 126.748 kb on - strand at 126.815 kb on - strand at 126.815 kb on - strand at 126.815 kb on - strand at 126.881 kb on - strand at 126.964 kb on + strand at 126.964 kb on + strand at 126.964 kb on + strand at 126.964 kb on + strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.965 kb on - strand at 126.988 kb on + strand at 126.988 kb on + strand at 126.989 kb on - strand at 126.989 kb on - strand at 126.989 kb on - strand at 126.989 kb on - strand at 126.989 kb on - strand at 126.989 kb on - strand at 127.050 kb on - strand, within Pf6N2E2_82 at 127.093 kb on + strand, within Pf6N2E2_82 at 127.094 kb on - strand, within Pf6N2E2_82 at 127.094 kb on - strand, within Pf6N2E2_82 at 127.226 kb on + strand at 127.302 kb on - strand at 127.349 kb on - strand at 127.397 kb on + strand at 127.398 kb on - strand at 127.398 kb on - strand at 127.412 kb on + strand at 127.412 kb on + strand at 127.412 kb on + strand at 127.413 kb on - strand at 127.413 kb on - strand at 127.413 kb on - strand at 127.413 kb on - strand at 127.413 kb on - strand at 127.413 kb on - strand at 127.529 kb on + strand at 127.529 kb on + strand at 127.529 kb on + strand at 127.529 kb on + strand at 127.529 kb on + strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.530 kb on - strand at 127.568 kb on + strand at 127.569 kb on - strand at 127.580 kb on + strand at 127.580 kb on + strand at 127.581 kb on - strand at 127.581 kb on - strand at 127.649 kb on + strand, within Pf6N2E2_83
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 125,592 + +0.2 125,592 + -1.0 125,592 + -0.4 125,592 + +0.3 125,592 + +1.1 125,592 + -0.5 125,593 - -0.2 125,628 + +1.9 125,629 - +0.2 125,629 - -1.4 125,742 + -0.0 125,742 + +1.2 125,749 + -0.5 125,749 + -0.4 125,749 + +0.4 125,749 + +0.2 125,749 + -0.2 125,749 + -0.5 125,750 - +1.2 125,782 + +0.1 125,783 - +0.1 125,783 - +0.2 125,783 - -0.8 125,783 - +2.3 125,844 - +1.3 125,905 + +0.1 125,905 + -1.5 125,929 + +0.1 126,012 + +1.1 126,193 + -1.8 126,193 + +0.8 126,194 - +0.4 126,276 - +0.1 126,372 - -0.1 126,388 - +0.5 126,388 - +0.2 126,394 - -0.1 126,394 - +0.4 126,394 - -0.4 126,394 - +0.8 126,424 + +0.4 126,470 + +0.4 126,553 - -0.1 126,569 - Pf6N2E2_81 0.13 -1.2 126,569 - Pf6N2E2_81 0.13 -0.5 126,693 - Pf6N2E2_81 0.72 -0.5 126,747 + +0.8 126,748 - +0.8 126,748 - +0.8 126,815 - +1.1 126,815 - +0.7 126,815 - +0.1 126,881 - +0.4 126,964 + +1.1 126,964 + -1.5 126,964 + -0.2 126,964 + -0.1 126,965 - -0.3 126,965 - -0.9 126,965 - -0.2 126,965 - +0.3 126,965 - -0.8 126,965 - +0.9 126,965 - -0.7 126,965 - +0.7 126,965 - +0.1 126,988 + +0.5 126,988 + -0.4 126,989 - -0.9 126,989 - +0.0 126,989 - +0.7 126,989 - +1.0 126,989 - -0.2 126,989 - -0.5 127,050 - Pf6N2E2_82 0.33 -0.2 127,093 + Pf6N2E2_82 0.61 +0.5 127,094 - Pf6N2E2_82 0.62 +0.7 127,094 - Pf6N2E2_82 0.62 +0.5 127,226 + +0.8 127,302 - +0.3 127,349 - +1.7 127,397 + -2.3 127,398 - -0.2 127,398 - +0.6 127,412 + +0.4 127,412 + -0.3 127,412 + +1.0 127,413 - +1.4 127,413 - +0.5 127,413 - +0.1 127,413 - +0.3 127,413 - +1.0 127,413 - +1.0 127,529 + -0.2 127,529 + +0.4 127,529 + +0.0 127,529 + +0.4 127,529 + +0.8 127,530 - +0.2 127,530 - +0.3 127,530 - -0.7 127,530 - +0.4 127,530 - -0.1 127,530 - +0.4 127,530 - +0.3 127,530 - -0.2 127,530 - +0.5 127,568 + +0.9 127,569 - +0.8 127,580 + +1.4 127,580 + -0.4 127,581 - -0.9 127,581 - +1.8 127,649 + Pf6N2E2_83 0.16 -2.0
Or see this region's nucleotide sequence