Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_81

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_81 and Pf6N2E2_82 are separated by 249 nucleotidesPf6N2E2_82 and Pf6N2E2_83 are separated by 361 nucleotides Pf6N2E2_81 - hypothetical protein, at 126,543 to 126,749 _81 Pf6N2E2_82 - hypothetical protein, at 126,999 to 127,151 _82 Pf6N2E2_83 - transcriptional regulator, AraC family, at 127,513 to 128,382 _83 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.592 kb on + strandat 125.592 kb on + strandat 125.592 kb on + strandat 125.592 kb on + strandat 125.592 kb on + strandat 125.592 kb on + strandat 125.593 kb on - strandat 125.628 kb on + strandat 125.629 kb on - strandat 125.629 kb on - strandat 125.742 kb on + strandat 125.742 kb on + strandat 125.749 kb on + strandat 125.749 kb on + strandat 125.749 kb on + strandat 125.749 kb on + strandat 125.749 kb on + strandat 125.749 kb on + strandat 125.750 kb on - strandat 125.782 kb on + strandat 125.783 kb on - strandat 125.783 kb on - strandat 125.783 kb on - strandat 125.783 kb on - strandat 125.844 kb on - strandat 125.905 kb on + strandat 125.905 kb on + strandat 125.929 kb on + strandat 126.012 kb on + strandat 126.193 kb on + strandat 126.193 kb on + strandat 126.194 kb on - strandat 126.276 kb on - strandat 126.372 kb on - strandat 126.388 kb on - strandat 126.388 kb on - strandat 126.394 kb on - strandat 126.394 kb on - strandat 126.394 kb on - strandat 126.394 kb on - strandat 126.424 kb on + strandat 126.470 kb on + strandat 126.553 kb on - strandat 126.569 kb on - strand, within Pf6N2E2_81at 126.569 kb on - strand, within Pf6N2E2_81at 126.693 kb on - strand, within Pf6N2E2_81at 126.747 kb on + strandat 126.748 kb on - strandat 126.748 kb on - strandat 126.815 kb on - strandat 126.815 kb on - strandat 126.815 kb on - strandat 126.881 kb on - strandat 126.964 kb on + strandat 126.964 kb on + strandat 126.964 kb on + strandat 126.964 kb on + strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.965 kb on - strandat 126.988 kb on + strandat 126.988 kb on + strandat 126.989 kb on - strandat 126.989 kb on - strandat 126.989 kb on - strandat 126.989 kb on - strandat 126.989 kb on - strandat 126.989 kb on - strandat 127.050 kb on - strand, within Pf6N2E2_82at 127.093 kb on + strand, within Pf6N2E2_82at 127.094 kb on - strand, within Pf6N2E2_82at 127.094 kb on - strand, within Pf6N2E2_82at 127.226 kb on + strandat 127.302 kb on - strandat 127.349 kb on - strandat 127.397 kb on + strandat 127.398 kb on - strandat 127.398 kb on - strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.413 kb on - strandat 127.413 kb on - strandat 127.413 kb on - strandat 127.413 kb on - strandat 127.413 kb on - strandat 127.413 kb on - strandat 127.529 kb on + strandat 127.529 kb on + strandat 127.529 kb on + strandat 127.529 kb on + strandat 127.529 kb on + strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.530 kb on - strandat 127.568 kb on + strandat 127.569 kb on - strandat 127.580 kb on + strandat 127.580 kb on + strandat 127.581 kb on - strandat 127.581 kb on - strandat 127.649 kb on + strand, within Pf6N2E2_83

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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125,592 + +0.2
125,592 + -1.0
125,592 + -0.4
125,592 + +0.3
125,592 + +1.1
125,592 + -0.5
125,593 - -0.2
125,628 + +1.9
125,629 - +0.2
125,629 - -1.4
125,742 + -0.0
125,742 + +1.2
125,749 + -0.5
125,749 + -0.4
125,749 + +0.4
125,749 + +0.2
125,749 + -0.2
125,749 + -0.5
125,750 - +1.2
125,782 + +0.1
125,783 - +0.1
125,783 - +0.2
125,783 - -0.8
125,783 - +2.3
125,844 - +1.3
125,905 + +0.1
125,905 + -1.5
125,929 + +0.1
126,012 + +1.1
126,193 + -1.8
126,193 + +0.8
126,194 - +0.4
126,276 - +0.1
126,372 - -0.1
126,388 - +0.5
126,388 - +0.2
126,394 - -0.1
126,394 - +0.4
126,394 - -0.4
126,394 - +0.8
126,424 + +0.4
126,470 + +0.4
126,553 - -0.1
126,569 - Pf6N2E2_81 0.13 -1.2
126,569 - Pf6N2E2_81 0.13 -0.5
126,693 - Pf6N2E2_81 0.72 -0.5
126,747 + +0.8
126,748 - +0.8
126,748 - +0.8
126,815 - +1.1
126,815 - +0.7
126,815 - +0.1
126,881 - +0.4
126,964 + +1.1
126,964 + -1.5
126,964 + -0.2
126,964 + -0.1
126,965 - -0.3
126,965 - -0.9
126,965 - -0.2
126,965 - +0.3
126,965 - -0.8
126,965 - +0.9
126,965 - -0.7
126,965 - +0.7
126,965 - +0.1
126,988 + +0.5
126,988 + -0.4
126,989 - -0.9
126,989 - +0.0
126,989 - +0.7
126,989 - +1.0
126,989 - -0.2
126,989 - -0.5
127,050 - Pf6N2E2_82 0.33 -0.2
127,093 + Pf6N2E2_82 0.61 +0.5
127,094 - Pf6N2E2_82 0.62 +0.7
127,094 - Pf6N2E2_82 0.62 +0.5
127,226 + +0.8
127,302 - +0.3
127,349 - +1.7
127,397 + -2.3
127,398 - -0.2
127,398 - +0.6
127,412 + +0.4
127,412 + -0.3
127,412 + +1.0
127,413 - +1.4
127,413 - +0.5
127,413 - +0.1
127,413 - +0.3
127,413 - +1.0
127,413 - +1.0
127,529 + -0.2
127,529 + +0.4
127,529 + +0.0
127,529 + +0.4
127,529 + +0.8
127,530 - +0.2
127,530 - +0.3
127,530 - -0.7
127,530 - +0.4
127,530 - -0.1
127,530 - +0.4
127,530 - +0.3
127,530 - -0.2
127,530 - +0.5
127,568 + +0.9
127,569 - +0.8
127,580 + +1.4
127,580 + -0.4
127,581 - -0.9
127,581 - +1.8
127,649 + Pf6N2E2_83 0.16 -2.0

Or see this region's nucleotide sequence