Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_693

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_692 and Pf6N2E2_693 are separated by 274 nucleotidesPf6N2E2_693 and Pf6N2E2_694 overlap by 6 nucleotides Pf6N2E2_692 - Glucarate dehydratase (EC 4.2.1.40), at 798,439 to 799,713 _692 Pf6N2E2_693 - hypothetical protein, at 799,988 to 800,125 _693 Pf6N2E2_694 - Outer membrane protein (porin), at 800,120 to 801,415 _694 Position (kb) 799 800 801Strain fitness (log2 ratio) -1 0 1 2at 798.991 kb on + strand, within Pf6N2E2_692at 799.110 kb on + strand, within Pf6N2E2_692at 799.110 kb on + strand, within Pf6N2E2_692at 799.168 kb on + strand, within Pf6N2E2_692at 799.168 kb on + strand, within Pf6N2E2_692at 799.927 kb on - strandat 799.952 kb on + strandat 799.952 kb on + strandat 799.953 kb on - strandat 799.953 kb on - strandat 799.953 kb on - strandat 799.990 kb on - strandat 799.990 kb on - strandat 799.990 kb on - strandat 800.055 kb on - strand, within Pf6N2E2_693at 800.055 kb on - strand, within Pf6N2E2_693at 800.055 kb on - strand, within Pf6N2E2_693at 800.132 kb on - strandat 800.169 kb on + strandat 800.169 kb on + strandat 800.169 kb on + strandat 800.169 kb on + strandat 800.169 kb on + strandat 800.170 kb on - strandat 800.170 kb on - strandat 800.170 kb on - strandat 800.170 kb on - strandat 800.222 kb on + strandat 800.258 kb on + strand, within Pf6N2E2_694at 800.273 kb on + strand, within Pf6N2E2_694at 800.274 kb on - strand, within Pf6N2E2_694at 800.309 kb on + strand, within Pf6N2E2_694at 800.354 kb on + strand, within Pf6N2E2_694at 800.354 kb on + strand, within Pf6N2E2_694at 800.355 kb on - strand, within Pf6N2E2_694at 800.355 kb on - strand, within Pf6N2E2_694at 800.355 kb on - strand, within Pf6N2E2_694at 800.355 kb on - strand, within Pf6N2E2_694at 800.480 kb on + strand, within Pf6N2E2_694at 800.481 kb on - strand, within Pf6N2E2_694at 800.481 kb on - strand, within Pf6N2E2_694at 800.481 kb on - strand, within Pf6N2E2_694at 800.481 kb on - strand, within Pf6N2E2_694at 800.814 kb on - strand, within Pf6N2E2_694at 800.843 kb on + strand, within Pf6N2E2_694at 800.843 kb on + strand, within Pf6N2E2_694at 800.844 kb on - strand, within Pf6N2E2_694at 800.844 kb on - strand, within Pf6N2E2_694at 800.844 kb on - strand, within Pf6N2E2_694at 800.864 kb on + strand, within Pf6N2E2_694at 800.925 kb on - strand, within Pf6N2E2_694at 801.051 kb on - strand, within Pf6N2E2_694at 801.068 kb on + strand, within Pf6N2E2_694at 801.068 kb on + strand, within Pf6N2E2_694at 801.068 kb on + strand, within Pf6N2E2_694

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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798,991 + Pf6N2E2_692 0.43 -0.0
799,110 + Pf6N2E2_692 0.53 -0.9
799,110 + Pf6N2E2_692 0.53 +1.0
799,168 + Pf6N2E2_692 0.57 -0.1
799,168 + Pf6N2E2_692 0.57 +2.7
799,927 - -0.5
799,952 + +0.2
799,952 + +0.1
799,953 - -0.3
799,953 - +0.2
799,953 - +1.0
799,990 - +0.9
799,990 - +0.8
799,990 - +0.9
800,055 - Pf6N2E2_693 0.49 -1.2
800,055 - Pf6N2E2_693 0.49 -0.0
800,055 - Pf6N2E2_693 0.49 -0.1
800,132 - -0.3
800,169 + -0.0
800,169 + -1.3
800,169 + -0.2
800,169 + +0.7
800,169 + -0.4
800,170 - +1.0
800,170 - -1.5
800,170 - +0.5
800,170 - +0.9
800,222 + -0.8
800,258 + Pf6N2E2_694 0.11 -0.2
800,273 + Pf6N2E2_694 0.12 -0.1
800,274 - Pf6N2E2_694 0.12 +1.4
800,309 + Pf6N2E2_694 0.15 -0.4
800,354 + Pf6N2E2_694 0.18 -1.1
800,354 + Pf6N2E2_694 0.18 -1.0
800,355 - Pf6N2E2_694 0.18 -0.1
800,355 - Pf6N2E2_694 0.18 -0.9
800,355 - Pf6N2E2_694 0.18 +1.0
800,355 - Pf6N2E2_694 0.18 +1.1
800,480 + Pf6N2E2_694 0.28 -0.4
800,481 - Pf6N2E2_694 0.28 +0.7
800,481 - Pf6N2E2_694 0.28 +0.8
800,481 - Pf6N2E2_694 0.28 +0.1
800,481 - Pf6N2E2_694 0.28 +0.2
800,814 - Pf6N2E2_694 0.54 -0.1
800,843 + Pf6N2E2_694 0.56 -0.8
800,843 + Pf6N2E2_694 0.56 +0.2
800,844 - Pf6N2E2_694 0.56 +0.8
800,844 - Pf6N2E2_694 0.56 -1.7
800,844 - Pf6N2E2_694 0.56 -0.7
800,864 + Pf6N2E2_694 0.57 -0.0
800,925 - Pf6N2E2_694 0.62 -0.5
801,051 - Pf6N2E2_694 0.72 +0.8
801,068 + Pf6N2E2_694 0.73 +0.2
801,068 + Pf6N2E2_694 0.73 +0.0
801,068 + Pf6N2E2_694 0.73 +0.4

Or see this region's nucleotide sequence