Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_692 and Pf6N2E2_693 are separated by 274 nucleotides Pf6N2E2_693 and Pf6N2E2_694 overlap by 6 nucleotides
Pf6N2E2_692 - Glucarate dehydratase (EC 4.2.1.40), at 798,439 to 799,713
_692
Pf6N2E2_693 - hypothetical protein, at 799,988 to 800,125
_693
Pf6N2E2_694 - Outer membrane protein (porin), at 800,120 to 801,415
_694
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1
2 at 798.991 kb on + strand, within Pf6N2E2_692 at 799.110 kb on + strand, within Pf6N2E2_692 at 799.110 kb on + strand, within Pf6N2E2_692 at 799.168 kb on + strand, within Pf6N2E2_692 at 799.168 kb on + strand, within Pf6N2E2_692 at 799.927 kb on - strand at 799.952 kb on + strand at 799.952 kb on + strand at 799.953 kb on - strand at 799.953 kb on - strand at 799.953 kb on - strand at 799.990 kb on - strand at 799.990 kb on - strand at 799.990 kb on - strand at 800.055 kb on - strand, within Pf6N2E2_693 at 800.055 kb on - strand, within Pf6N2E2_693 at 800.055 kb on - strand, within Pf6N2E2_693 at 800.132 kb on - strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.170 kb on - strand at 800.170 kb on - strand at 800.170 kb on - strand at 800.170 kb on - strand at 800.222 kb on + strand at 800.258 kb on + strand, within Pf6N2E2_694 at 800.273 kb on + strand, within Pf6N2E2_694 at 800.274 kb on - strand, within Pf6N2E2_694 at 800.309 kb on + strand, within Pf6N2E2_694 at 800.354 kb on + strand, within Pf6N2E2_694 at 800.354 kb on + strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.480 kb on + strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694 at 800.814 kb on - strand, within Pf6N2E2_694 at 800.843 kb on + strand, within Pf6N2E2_694 at 800.843 kb on + strand, within Pf6N2E2_694 at 800.844 kb on - strand, within Pf6N2E2_694 at 800.844 kb on - strand, within Pf6N2E2_694 at 800.844 kb on - strand, within Pf6N2E2_694 at 800.864 kb on + strand, within Pf6N2E2_694 at 800.925 kb on - strand, within Pf6N2E2_694 at 801.051 kb on - strand, within Pf6N2E2_694 at 801.068 kb on + strand, within Pf6N2E2_694 at 801.068 kb on + strand, within Pf6N2E2_694 at 801.068 kb on + strand, within Pf6N2E2_694
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 798,991 + Pf6N2E2_692 0.43 -0.0 799,110 + Pf6N2E2_692 0.53 -0.9 799,110 + Pf6N2E2_692 0.53 +1.0 799,168 + Pf6N2E2_692 0.57 -0.1 799,168 + Pf6N2E2_692 0.57 +2.7 799,927 - -0.5 799,952 + +0.2 799,952 + +0.1 799,953 - -0.3 799,953 - +0.2 799,953 - +1.0 799,990 - +0.9 799,990 - +0.8 799,990 - +0.9 800,055 - Pf6N2E2_693 0.49 -1.2 800,055 - Pf6N2E2_693 0.49 -0.0 800,055 - Pf6N2E2_693 0.49 -0.1 800,132 - -0.3 800,169 + -0.0 800,169 + -1.3 800,169 + -0.2 800,169 + +0.7 800,169 + -0.4 800,170 - +1.0 800,170 - -1.5 800,170 - +0.5 800,170 - +0.9 800,222 + -0.8 800,258 + Pf6N2E2_694 0.11 -0.2 800,273 + Pf6N2E2_694 0.12 -0.1 800,274 - Pf6N2E2_694 0.12 +1.4 800,309 + Pf6N2E2_694 0.15 -0.4 800,354 + Pf6N2E2_694 0.18 -1.1 800,354 + Pf6N2E2_694 0.18 -1.0 800,355 - Pf6N2E2_694 0.18 -0.1 800,355 - Pf6N2E2_694 0.18 -0.9 800,355 - Pf6N2E2_694 0.18 +1.0 800,355 - Pf6N2E2_694 0.18 +1.1 800,480 + Pf6N2E2_694 0.28 -0.4 800,481 - Pf6N2E2_694 0.28 +0.7 800,481 - Pf6N2E2_694 0.28 +0.8 800,481 - Pf6N2E2_694 0.28 +0.1 800,481 - Pf6N2E2_694 0.28 +0.2 800,814 - Pf6N2E2_694 0.54 -0.1 800,843 + Pf6N2E2_694 0.56 -0.8 800,843 + Pf6N2E2_694 0.56 +0.2 800,844 - Pf6N2E2_694 0.56 +0.8 800,844 - Pf6N2E2_694 0.56 -1.7 800,844 - Pf6N2E2_694 0.56 -0.7 800,864 + Pf6N2E2_694 0.57 -0.0 800,925 - Pf6N2E2_694 0.62 -0.5 801,051 - Pf6N2E2_694 0.72 +0.8 801,068 + Pf6N2E2_694 0.73 +0.2 801,068 + Pf6N2E2_694 0.73 +0.0 801,068 + Pf6N2E2_694 0.73 +0.4
Or see this region's nucleotide sequence