Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6085

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6174 and Pf6N2E2_6175 are separated by 166 nucleotidesPf6N2E2_6175 and Pf6N2E2_6084 are separated by 115 nucleotidesPf6N2E2_6084 and Pf6N2E2_6085 are separated by 142 nucleotides Pf6N2E2_6174 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 6,905,531 to 6,908,422 _6174 Pf6N2E2_6175 - 5S RNA, at 6,908,589 to 6,908,708 _6175 Pf6N2E2_6084 - FIG00638667: hypothetical protein, at 6,908,824 to 6,909,225 _6084 Pf6N2E2_6085 - Aha1 domain superfamily, at 6,909,368 to 6,909,826 _6085 Position (kb) 6909 6910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6908.796 kb on - strandat 6908.874 kb on - strand, within Pf6N2E2_6084at 6908.874 kb on - strand, within Pf6N2E2_6084at 6908.901 kb on + strand, within Pf6N2E2_6084at 6908.901 kb on + strand, within Pf6N2E2_6084at 6908.927 kb on + strand, within Pf6N2E2_6084at 6908.927 kb on + strand, within Pf6N2E2_6084at 6909.074 kb on + strand, within Pf6N2E2_6084at 6909.074 kb on + strand, within Pf6N2E2_6084at 6909.074 kb on + strand, within Pf6N2E2_6084at 6909.074 kb on + strand, within Pf6N2E2_6084at 6909.180 kb on + strand, within Pf6N2E2_6084at 6909.268 kb on + strandat 6909.269 kb on - strandat 6909.269 kb on - strandat 6909.306 kb on + strandat 6909.307 kb on - strandat 6909.307 kb on - strandat 6909.334 kb on + strandat 6909.334 kb on + strandat 6909.334 kb on + strandat 6909.334 kb on + strandat 6909.334 kb on + strandat 6909.334 kb on + strandat 6909.335 kb on - strandat 6909.343 kb on - strandat 6909.343 kb on - strandat 6909.531 kb on - strand, within Pf6N2E2_6085at 6909.531 kb on - strand, within Pf6N2E2_6085at 6909.615 kb on - strand, within Pf6N2E2_6085at 6909.827 kb on + strandat 6909.828 kb on - strandat 6909.872 kb on + strandat 6909.884 kb on + strandat 6909.896 kb on + strandat 6909.896 kb on + strandat 6909.896 kb on + strandat 6909.896 kb on + strandat 6909.897 kb on - strandat 6909.897 kb on - strandat 6909.897 kb on - strandat 6909.897 kb on - strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.900 kb on + strandat 6909.901 kb on - strandat 6909.901 kb on - strandat 6910.018 kb on + strandat 6910.082 kb on + strandat 6910.082 kb on + strandat 6910.082 kb on + strandat 6910.083 kb on - strandat 6910.096 kb on + strandat 6910.096 kb on + strandat 6910.096 kb on + strandat 6910.097 kb on - strandat 6910.144 kb on + strandat 6910.144 kb on + strandat 6910.149 kb on + strandat 6910.149 kb on + strandat 6910.149 kb on + strandat 6910.149 kb on + strandat 6910.149 kb on + strandat 6910.149 kb on + strandat 6910.149 kb on + strandat 6910.150 kb on - strandat 6910.150 kb on - strandat 6910.150 kb on - strandat 6910.150 kb on - strandat 6910.166 kb on + strandat 6910.167 kb on - strandat 6910.684 kb on - strandat 6910.795 kb on + strandat 6910.810 kb on + strandat 6910.810 kb on + strandat 6910.810 kb on + strandat 6910.810 kb on + strandat 6910.811 kb on - strandat 6910.811 kb on - strandat 6910.811 kb on - strandat 6910.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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6,908,796 - +0.4
6,908,874 - Pf6N2E2_6084 0.12 -1.1
6,908,874 - Pf6N2E2_6084 0.12 +0.7
6,908,901 + Pf6N2E2_6084 0.19 -0.4
6,908,901 + Pf6N2E2_6084 0.19 -0.0
6,908,927 + Pf6N2E2_6084 0.26 +2.5
6,908,927 + Pf6N2E2_6084 0.26 +0.8
6,909,074 + Pf6N2E2_6084 0.62 +1.2
6,909,074 + Pf6N2E2_6084 0.62 -0.1
6,909,074 + Pf6N2E2_6084 0.62 +1.1
6,909,074 + Pf6N2E2_6084 0.62 +0.1
6,909,180 + Pf6N2E2_6084 0.89 +0.3
6,909,268 + +2.2
6,909,269 - -2.3
6,909,269 - -0.3
6,909,306 + +1.2
6,909,307 - -0.3
6,909,307 - -1.7
6,909,334 + -0.4
6,909,334 + -1.1
6,909,334 + +0.5
6,909,334 + -0.5
6,909,334 + -0.9
6,909,334 + -0.3
6,909,335 - -0.1
6,909,343 - -0.3
6,909,343 - +0.0
6,909,531 - Pf6N2E2_6085 0.36 -1.1
6,909,531 - Pf6N2E2_6085 0.36 +0.1
6,909,615 - Pf6N2E2_6085 0.54 -0.6
6,909,827 + +1.1
6,909,828 - +0.2
6,909,872 + +0.3
6,909,884 + +0.0
6,909,896 + -0.2
6,909,896 + +0.7
6,909,896 + +1.2
6,909,896 + -0.9
6,909,897 - +0.6
6,909,897 - +1.0
6,909,897 - +0.5
6,909,897 - -0.8
6,909,900 + +0.9
6,909,900 + +0.2
6,909,900 + +1.1
6,909,900 + +0.9
6,909,900 + -0.1
6,909,900 + +0.3
6,909,900 + +1.1
6,909,900 + +0.8
6,909,900 + -0.2
6,909,900 + +0.2
6,909,900 + +0.3
6,909,901 - -1.1
6,909,901 - +0.9
6,910,018 + +0.9
6,910,082 + +0.8
6,910,082 + -0.4
6,910,082 + +0.3
6,910,083 - +1.3
6,910,096 + +1.1
6,910,096 + -0.9
6,910,096 + +0.9
6,910,097 - +0.5
6,910,144 + +0.8
6,910,144 + +0.5
6,910,149 + -0.4
6,910,149 + +0.2
6,910,149 + -0.3
6,910,149 + -0.2
6,910,149 + +0.1
6,910,149 + -3.1
6,910,149 + +0.8
6,910,150 - +0.6
6,910,150 - -0.5
6,910,150 - +0.3
6,910,150 - -0.9
6,910,166 + +3.5
6,910,167 - +2.2
6,910,684 - +0.1
6,910,795 + -0.3
6,910,810 + -0.5
6,910,810 + -0.4
6,910,810 + +0.2
6,910,810 + +0.2
6,910,811 - +1.0
6,910,811 - -0.9
6,910,811 - -0.0
6,910,811 - +1.0

Or see this region's nucleotide sequence