Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5963 and Pf6N2E2_5964 are separated by 16 nucleotides Pf6N2E2_5964 and Pf6N2E2_5965 are separated by 162 nucleotides Pf6N2E2_5965 and Pf6N2E2_5966 overlap by 4 nucleotides
Pf6N2E2_5963 - lipoprotein, putative, at 6,782,447 to 6,783,052
_5963
Pf6N2E2_5964 - FIG003620: Proteophosphoglycan precursor (Fragment), at 6,783,069 to 6,783,629
_5964
Pf6N2E2_5965 - transcriptional regulator, at 6,783,792 to 6,784,538
_5965
Pf6N2E2_5966 - L-arabinolactonase (EC 3.1.1.15) (from data) , at 6,784,535 to 6,785,410
_5966
Position (kb)
6783
6784
6785 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6782.922 kb on - strand, within Pf6N2E2_5963 at 6782.922 kb on - strand, within Pf6N2E2_5963 at 6782.922 kb on - strand, within Pf6N2E2_5963 at 6782.932 kb on + strand, within Pf6N2E2_5963 at 6782.932 kb on + strand, within Pf6N2E2_5963 at 6782.932 kb on + strand, within Pf6N2E2_5963 at 6782.933 kb on - strand, within Pf6N2E2_5963 at 6782.933 kb on - strand, within Pf6N2E2_5963 at 6782.961 kb on + strand, within Pf6N2E2_5963 at 6783.017 kb on + strand at 6783.018 kb on - strand at 6783.018 kb on - strand at 6783.018 kb on - strand at 6783.018 kb on - strand at 6783.018 kb on - strand at 6783.050 kb on + strand at 6783.050 kb on + strand at 6783.054 kb on + strand at 6783.054 kb on + strand at 6783.201 kb on + strand, within Pf6N2E2_5964 at 6783.204 kb on + strand, within Pf6N2E2_5964 at 6783.205 kb on - strand, within Pf6N2E2_5964 at 6783.205 kb on - strand, within Pf6N2E2_5964 at 6783.213 kb on - strand, within Pf6N2E2_5964 at 6783.213 kb on - strand, within Pf6N2E2_5964 at 6783.279 kb on + strand, within Pf6N2E2_5964 at 6783.279 kb on + strand, within Pf6N2E2_5964 at 6783.280 kb on - strand, within Pf6N2E2_5964 at 6783.280 kb on - strand, within Pf6N2E2_5964 at 6783.280 kb on - strand, within Pf6N2E2_5964 at 6783.280 kb on - strand, within Pf6N2E2_5964 at 6783.477 kb on + strand, within Pf6N2E2_5964 at 6783.477 kb on + strand, within Pf6N2E2_5964 at 6783.528 kb on + strand, within Pf6N2E2_5964 at 6783.528 kb on + strand, within Pf6N2E2_5964 at 6783.613 kb on + strand at 6783.767 kb on + strand at 6783.767 kb on + strand at 6783.768 kb on - strand at 6783.769 kb on + strand at 6783.769 kb on + strand at 6783.770 kb on - strand at 6783.770 kb on - strand at 6783.770 kb on - strand at 6784.177 kb on - strand, within Pf6N2E2_5965 at 6784.216 kb on - strand, within Pf6N2E2_5965 at 6784.266 kb on - strand, within Pf6N2E2_5965 at 6784.266 kb on - strand, within Pf6N2E2_5965 at 6784.473 kb on + strand at 6784.473 kb on + strand at 6784.474 kb on - strand at 6784.478 kb on + strand at 6784.479 kb on - strand at 6784.517 kb on - strand at 6784.613 kb on + strand at 6784.614 kb on - strand at 6784.703 kb on - strand, within Pf6N2E2_5966 at 6784.751 kb on + strand, within Pf6N2E2_5966 at 6784.914 kb on + strand, within Pf6N2E2_5966 at 6784.914 kb on + strand, within Pf6N2E2_5966 at 6784.914 kb on + strand, within Pf6N2E2_5966 at 6784.915 kb on - strand, within Pf6N2E2_5966 at 6785.037 kb on - strand, within Pf6N2E2_5966 at 6785.037 kb on - strand, within Pf6N2E2_5966 at 6785.066 kb on + strand, within Pf6N2E2_5966 at 6785.077 kb on + strand, within Pf6N2E2_5966 at 6785.171 kb on + strand, within Pf6N2E2_5966 at 6785.171 kb on + strand, within Pf6N2E2_5966 at 6785.171 kb on + strand, within Pf6N2E2_5966 at 6785.172 kb on - strand, within Pf6N2E2_5966 at 6785.173 kb on + strand, within Pf6N2E2_5966 at 6785.173 kb on + strand, within Pf6N2E2_5966 at 6785.174 kb on - strand, within Pf6N2E2_5966 at 6785.174 kb on - strand, within Pf6N2E2_5966 at 6785.174 kb on - strand, within Pf6N2E2_5966 at 6785.306 kb on + strand, within Pf6N2E2_5966 at 6785.306 kb on + strand, within Pf6N2E2_5966 at 6785.307 kb on - strand, within Pf6N2E2_5966 at 6785.307 kb on - strand, within Pf6N2E2_5966 at 6785.307 kb on - strand, within Pf6N2E2_5966 at 6785.374 kb on + strand at 6785.376 kb on + strand at 6785.376 kb on + strand at 6785.376 kb on + strand at 6785.376 kb on + strand at 6785.376 kb on + strand at 6785.377 kb on - strand at 6785.377 kb on - strand at 6785.393 kb on - strand at 6785.429 kb on + strand at 6785.429 kb on + strand at 6785.429 kb on + strand at 6785.430 kb on - strand at 6785.430 kb on - strand at 6785.437 kb on + strand at 6785.437 kb on + strand at 6785.437 kb on + strand at 6785.437 kb on + strand at 6785.437 kb on + strand at 6785.438 kb on - strand at 6785.438 kb on - strand at 6785.438 kb on - strand at 6785.439 kb on + strand at 6785.439 kb on + strand at 6785.467 kb on + strand at 6785.467 kb on + strand at 6785.468 kb on - strand at 6785.486 kb on + strand at 6785.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 6,782,922 - Pf6N2E2_5963 0.78 +0.3 6,782,922 - Pf6N2E2_5963 0.78 -1.7 6,782,922 - Pf6N2E2_5963 0.78 +0.7 6,782,932 + Pf6N2E2_5963 0.80 +0.1 6,782,932 + Pf6N2E2_5963 0.80 -0.7 6,782,932 + Pf6N2E2_5963 0.80 -0.3 6,782,933 - Pf6N2E2_5963 0.80 +0.3 6,782,933 - Pf6N2E2_5963 0.80 +0.5 6,782,961 + Pf6N2E2_5963 0.85 +1.7 6,783,017 + +0.3 6,783,018 - +1.3 6,783,018 - -0.9 6,783,018 - +0.0 6,783,018 - -1.5 6,783,018 - +0.1 6,783,050 + +0.1 6,783,050 + +2.4 6,783,054 + +0.1 6,783,054 + +0.4 6,783,201 + Pf6N2E2_5964 0.24 +2.1 6,783,204 + Pf6N2E2_5964 0.24 -1.1 6,783,205 - Pf6N2E2_5964 0.24 -1.5 6,783,205 - Pf6N2E2_5964 0.24 -1.7 6,783,213 - Pf6N2E2_5964 0.26 +0.5 6,783,213 - Pf6N2E2_5964 0.26 -0.6 6,783,279 + Pf6N2E2_5964 0.37 +1.2 6,783,279 + Pf6N2E2_5964 0.37 +0.2 6,783,280 - Pf6N2E2_5964 0.38 +0.7 6,783,280 - Pf6N2E2_5964 0.38 -1.6 6,783,280 - Pf6N2E2_5964 0.38 +0.5 6,783,280 - Pf6N2E2_5964 0.38 +1.2 6,783,477 + Pf6N2E2_5964 0.73 +0.4 6,783,477 + Pf6N2E2_5964 0.73 +0.6 6,783,528 + Pf6N2E2_5964 0.82 -0.7 6,783,528 + Pf6N2E2_5964 0.82 +0.1 6,783,613 + -1.3 6,783,767 + -0.7 6,783,767 + +0.7 6,783,768 - -0.5 6,783,769 + +0.4 6,783,769 + -1.1 6,783,770 - -0.0 6,783,770 - +1.5 6,783,770 - +1.0 6,784,177 - Pf6N2E2_5965 0.52 -0.6 6,784,216 - Pf6N2E2_5965 0.57 -1.7 6,784,266 - Pf6N2E2_5965 0.63 -0.3 6,784,266 - Pf6N2E2_5965 0.63 -0.9 6,784,473 + +0.1 6,784,473 + -0.8 6,784,474 - -1.9 6,784,478 + -0.3 6,784,479 - -0.4 6,784,517 - +1.4 6,784,613 + +0.5 6,784,614 - +0.1 6,784,703 - Pf6N2E2_5966 0.19 +0.6 6,784,751 + Pf6N2E2_5966 0.25 +1.1 6,784,914 + Pf6N2E2_5966 0.43 -0.4 6,784,914 + Pf6N2E2_5966 0.43 +0.4 6,784,914 + Pf6N2E2_5966 0.43 -0.8 6,784,915 - Pf6N2E2_5966 0.43 -0.6 6,785,037 - Pf6N2E2_5966 0.57 -0.1 6,785,037 - Pf6N2E2_5966 0.57 +0.9 6,785,066 + Pf6N2E2_5966 0.61 +0.2 6,785,077 + Pf6N2E2_5966 0.62 +0.3 6,785,171 + Pf6N2E2_5966 0.73 -0.3 6,785,171 + Pf6N2E2_5966 0.73 +0.3 6,785,171 + Pf6N2E2_5966 0.73 -0.1 6,785,172 - Pf6N2E2_5966 0.73 +1.8 6,785,173 + Pf6N2E2_5966 0.73 -0.0 6,785,173 + Pf6N2E2_5966 0.73 +1.8 6,785,174 - Pf6N2E2_5966 0.73 +0.4 6,785,174 - Pf6N2E2_5966 0.73 +0.7 6,785,174 - Pf6N2E2_5966 0.73 +0.1 6,785,306 + Pf6N2E2_5966 0.88 +1.6 6,785,306 + Pf6N2E2_5966 0.88 -0.9 6,785,307 - Pf6N2E2_5966 0.88 +0.2 6,785,307 - Pf6N2E2_5966 0.88 +1.1 6,785,307 - Pf6N2E2_5966 0.88 +2.5 6,785,374 + -0.4 6,785,376 + +0.7 6,785,376 + +0.5 6,785,376 + -1.0 6,785,376 + -0.8 6,785,376 + +0.6 6,785,377 - -0.5 6,785,377 - +0.9 6,785,393 - -1.0 6,785,429 + -0.6 6,785,429 + +1.5 6,785,429 + +1.4 6,785,430 - +0.6 6,785,430 - +0.2 6,785,437 + -1.1 6,785,437 + -0.3 6,785,437 + -0.2 6,785,437 + +1.1 6,785,437 + +1.6 6,785,438 - -1.2 6,785,438 - +0.7 6,785,438 - +0.2 6,785,439 + +2.8 6,785,439 + +0.5 6,785,467 + +0.1 6,785,467 + +1.1 6,785,468 - -0.1 6,785,486 + +1.6 6,785,487 - -1.0
Or see this region's nucleotide sequence