Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5965

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5963 and Pf6N2E2_5964 are separated by 16 nucleotidesPf6N2E2_5964 and Pf6N2E2_5965 are separated by 162 nucleotidesPf6N2E2_5965 and Pf6N2E2_5966 overlap by 4 nucleotides Pf6N2E2_5963 - lipoprotein, putative, at 6,782,447 to 6,783,052 _5963 Pf6N2E2_5964 - FIG003620: Proteophosphoglycan precursor (Fragment), at 6,783,069 to 6,783,629 _5964 Pf6N2E2_5965 - transcriptional regulator, at 6,783,792 to 6,784,538 _5965 Pf6N2E2_5966 - L-arabinolactonase (EC 3.1.1.15) (from data), at 6,784,535 to 6,785,410 _5966 Position (kb) 6783 6784 6785Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6782.922 kb on - strand, within Pf6N2E2_5963at 6782.922 kb on - strand, within Pf6N2E2_5963at 6782.922 kb on - strand, within Pf6N2E2_5963at 6782.932 kb on + strand, within Pf6N2E2_5963at 6782.932 kb on + strand, within Pf6N2E2_5963at 6782.932 kb on + strand, within Pf6N2E2_5963at 6782.933 kb on - strand, within Pf6N2E2_5963at 6782.933 kb on - strand, within Pf6N2E2_5963at 6782.961 kb on + strand, within Pf6N2E2_5963at 6783.017 kb on + strandat 6783.018 kb on - strandat 6783.018 kb on - strandat 6783.018 kb on - strandat 6783.018 kb on - strandat 6783.018 kb on - strandat 6783.050 kb on + strandat 6783.050 kb on + strandat 6783.054 kb on + strandat 6783.054 kb on + strandat 6783.201 kb on + strand, within Pf6N2E2_5964at 6783.204 kb on + strand, within Pf6N2E2_5964at 6783.205 kb on - strand, within Pf6N2E2_5964at 6783.205 kb on - strand, within Pf6N2E2_5964at 6783.213 kb on - strand, within Pf6N2E2_5964at 6783.213 kb on - strand, within Pf6N2E2_5964at 6783.279 kb on + strand, within Pf6N2E2_5964at 6783.279 kb on + strand, within Pf6N2E2_5964at 6783.280 kb on - strand, within Pf6N2E2_5964at 6783.280 kb on - strand, within Pf6N2E2_5964at 6783.280 kb on - strand, within Pf6N2E2_5964at 6783.280 kb on - strand, within Pf6N2E2_5964at 6783.477 kb on + strand, within Pf6N2E2_5964at 6783.477 kb on + strand, within Pf6N2E2_5964at 6783.528 kb on + strand, within Pf6N2E2_5964at 6783.528 kb on + strand, within Pf6N2E2_5964at 6783.613 kb on + strandat 6783.767 kb on + strandat 6783.767 kb on + strandat 6783.768 kb on - strandat 6783.769 kb on + strandat 6783.769 kb on + strandat 6783.770 kb on - strandat 6783.770 kb on - strandat 6783.770 kb on - strandat 6784.177 kb on - strand, within Pf6N2E2_5965at 6784.216 kb on - strand, within Pf6N2E2_5965at 6784.266 kb on - strand, within Pf6N2E2_5965at 6784.266 kb on - strand, within Pf6N2E2_5965at 6784.473 kb on + strandat 6784.473 kb on + strandat 6784.474 kb on - strandat 6784.478 kb on + strandat 6784.479 kb on - strandat 6784.517 kb on - strandat 6784.613 kb on + strandat 6784.614 kb on - strandat 6784.703 kb on - strand, within Pf6N2E2_5966at 6784.751 kb on + strand, within Pf6N2E2_5966at 6784.914 kb on + strand, within Pf6N2E2_5966at 6784.914 kb on + strand, within Pf6N2E2_5966at 6784.914 kb on + strand, within Pf6N2E2_5966at 6784.915 kb on - strand, within Pf6N2E2_5966at 6785.037 kb on - strand, within Pf6N2E2_5966at 6785.037 kb on - strand, within Pf6N2E2_5966at 6785.066 kb on + strand, within Pf6N2E2_5966at 6785.077 kb on + strand, within Pf6N2E2_5966at 6785.171 kb on + strand, within Pf6N2E2_5966at 6785.171 kb on + strand, within Pf6N2E2_5966at 6785.171 kb on + strand, within Pf6N2E2_5966at 6785.172 kb on - strand, within Pf6N2E2_5966at 6785.173 kb on + strand, within Pf6N2E2_5966at 6785.173 kb on + strand, within Pf6N2E2_5966at 6785.174 kb on - strand, within Pf6N2E2_5966at 6785.174 kb on - strand, within Pf6N2E2_5966at 6785.174 kb on - strand, within Pf6N2E2_5966at 6785.306 kb on + strand, within Pf6N2E2_5966at 6785.306 kb on + strand, within Pf6N2E2_5966at 6785.307 kb on - strand, within Pf6N2E2_5966at 6785.307 kb on - strand, within Pf6N2E2_5966at 6785.307 kb on - strand, within Pf6N2E2_5966at 6785.374 kb on + strandat 6785.376 kb on + strandat 6785.376 kb on + strandat 6785.376 kb on + strandat 6785.376 kb on + strandat 6785.376 kb on + strandat 6785.377 kb on - strandat 6785.377 kb on - strandat 6785.393 kb on - strandat 6785.429 kb on + strandat 6785.429 kb on + strandat 6785.429 kb on + strandat 6785.430 kb on - strandat 6785.430 kb on - strandat 6785.437 kb on + strandat 6785.437 kb on + strandat 6785.437 kb on + strandat 6785.437 kb on + strandat 6785.437 kb on + strandat 6785.438 kb on - strandat 6785.438 kb on - strandat 6785.438 kb on - strandat 6785.439 kb on + strandat 6785.439 kb on + strandat 6785.467 kb on + strandat 6785.467 kb on + strandat 6785.468 kb on - strandat 6785.486 kb on + strandat 6785.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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6,782,922 - Pf6N2E2_5963 0.78 +0.3
6,782,922 - Pf6N2E2_5963 0.78 -1.7
6,782,922 - Pf6N2E2_5963 0.78 +0.7
6,782,932 + Pf6N2E2_5963 0.80 +0.1
6,782,932 + Pf6N2E2_5963 0.80 -0.7
6,782,932 + Pf6N2E2_5963 0.80 -0.3
6,782,933 - Pf6N2E2_5963 0.80 +0.3
6,782,933 - Pf6N2E2_5963 0.80 +0.5
6,782,961 + Pf6N2E2_5963 0.85 +1.7
6,783,017 + +0.3
6,783,018 - +1.3
6,783,018 - -0.9
6,783,018 - +0.0
6,783,018 - -1.5
6,783,018 - +0.1
6,783,050 + +0.1
6,783,050 + +2.4
6,783,054 + +0.1
6,783,054 + +0.4
6,783,201 + Pf6N2E2_5964 0.24 +2.1
6,783,204 + Pf6N2E2_5964 0.24 -1.1
6,783,205 - Pf6N2E2_5964 0.24 -1.5
6,783,205 - Pf6N2E2_5964 0.24 -1.7
6,783,213 - Pf6N2E2_5964 0.26 +0.5
6,783,213 - Pf6N2E2_5964 0.26 -0.6
6,783,279 + Pf6N2E2_5964 0.37 +1.2
6,783,279 + Pf6N2E2_5964 0.37 +0.2
6,783,280 - Pf6N2E2_5964 0.38 +0.7
6,783,280 - Pf6N2E2_5964 0.38 -1.6
6,783,280 - Pf6N2E2_5964 0.38 +0.5
6,783,280 - Pf6N2E2_5964 0.38 +1.2
6,783,477 + Pf6N2E2_5964 0.73 +0.4
6,783,477 + Pf6N2E2_5964 0.73 +0.6
6,783,528 + Pf6N2E2_5964 0.82 -0.7
6,783,528 + Pf6N2E2_5964 0.82 +0.1
6,783,613 + -1.3
6,783,767 + -0.7
6,783,767 + +0.7
6,783,768 - -0.5
6,783,769 + +0.4
6,783,769 + -1.1
6,783,770 - -0.0
6,783,770 - +1.5
6,783,770 - +1.0
6,784,177 - Pf6N2E2_5965 0.52 -0.6
6,784,216 - Pf6N2E2_5965 0.57 -1.7
6,784,266 - Pf6N2E2_5965 0.63 -0.3
6,784,266 - Pf6N2E2_5965 0.63 -0.9
6,784,473 + +0.1
6,784,473 + -0.8
6,784,474 - -1.9
6,784,478 + -0.3
6,784,479 - -0.4
6,784,517 - +1.4
6,784,613 + +0.5
6,784,614 - +0.1
6,784,703 - Pf6N2E2_5966 0.19 +0.6
6,784,751 + Pf6N2E2_5966 0.25 +1.1
6,784,914 + Pf6N2E2_5966 0.43 -0.4
6,784,914 + Pf6N2E2_5966 0.43 +0.4
6,784,914 + Pf6N2E2_5966 0.43 -0.8
6,784,915 - Pf6N2E2_5966 0.43 -0.6
6,785,037 - Pf6N2E2_5966 0.57 -0.1
6,785,037 - Pf6N2E2_5966 0.57 +0.9
6,785,066 + Pf6N2E2_5966 0.61 +0.2
6,785,077 + Pf6N2E2_5966 0.62 +0.3
6,785,171 + Pf6N2E2_5966 0.73 -0.3
6,785,171 + Pf6N2E2_5966 0.73 +0.3
6,785,171 + Pf6N2E2_5966 0.73 -0.1
6,785,172 - Pf6N2E2_5966 0.73 +1.8
6,785,173 + Pf6N2E2_5966 0.73 -0.0
6,785,173 + Pf6N2E2_5966 0.73 +1.8
6,785,174 - Pf6N2E2_5966 0.73 +0.4
6,785,174 - Pf6N2E2_5966 0.73 +0.7
6,785,174 - Pf6N2E2_5966 0.73 +0.1
6,785,306 + Pf6N2E2_5966 0.88 +1.6
6,785,306 + Pf6N2E2_5966 0.88 -0.9
6,785,307 - Pf6N2E2_5966 0.88 +0.2
6,785,307 - Pf6N2E2_5966 0.88 +1.1
6,785,307 - Pf6N2E2_5966 0.88 +2.5
6,785,374 + -0.4
6,785,376 + +0.7
6,785,376 + +0.5
6,785,376 + -1.0
6,785,376 + -0.8
6,785,376 + +0.6
6,785,377 - -0.5
6,785,377 - +0.9
6,785,393 - -1.0
6,785,429 + -0.6
6,785,429 + +1.5
6,785,429 + +1.4
6,785,430 - +0.6
6,785,430 - +0.2
6,785,437 + -1.1
6,785,437 + -0.3
6,785,437 + -0.2
6,785,437 + +1.1
6,785,437 + +1.6
6,785,438 - -1.2
6,785,438 - +0.7
6,785,438 - +0.2
6,785,439 + +2.8
6,785,439 + +0.5
6,785,467 + +0.1
6,785,467 + +1.1
6,785,468 - -0.1
6,785,486 + +1.6
6,785,487 - -1.0

Or see this region's nucleotide sequence