Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5861

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5860 and Pf6N2E2_5861 are separated by 216 nucleotidesPf6N2E2_5861 and Pf6N2E2_5862 are separated by 72 nucleotidesPf6N2E2_5862 and Pf6N2E2_5863 are separated by 157 nucleotidesPf6N2E2_5863 and Pf6N2E2_5864 overlap by 4 nucleotides Pf6N2E2_5860 - Branched-chain amino acid transport system carrier protein, at 6,680,156 to 6,681,469 _5860 Pf6N2E2_5861 - FIG00953885: hypothetical protein, at 6,681,686 to 6,682,423 _5861 Pf6N2E2_5862 - Lipoprotein, putative, at 6,682,496 to 6,682,744 _5862 Pf6N2E2_5863 - FIG00956080: hypothetical protein, at 6,682,902 to 6,683,378 _5863 Pf6N2E2_5864 - FIG00953296: hypothetical protein, at 6,683,375 to 6,683,836 _5864 Position (kb) 6681 6682 6683Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6680.693 kb on + strand, within Pf6N2E2_5860at 6680.693 kb on + strand, within Pf6N2E2_5860at 6680.693 kb on + strand, within Pf6N2E2_5860at 6680.694 kb on - strand, within Pf6N2E2_5860at 6680.694 kb on - strand, within Pf6N2E2_5860at 6680.694 kb on - strand, within Pf6N2E2_5860at 6680.694 kb on - strand, within Pf6N2E2_5860at 6680.694 kb on - strand, within Pf6N2E2_5860at 6680.694 kb on - strand, within Pf6N2E2_5860at 6680.698 kb on - strand, within Pf6N2E2_5860at 6680.698 kb on - strand, within Pf6N2E2_5860at 6680.879 kb on + strand, within Pf6N2E2_5860at 6680.879 kb on + strand, within Pf6N2E2_5860at 6680.879 kb on + strand, within Pf6N2E2_5860at 6680.880 kb on - strand, within Pf6N2E2_5860at 6680.960 kb on + strand, within Pf6N2E2_5860at 6680.960 kb on + strand, within Pf6N2E2_5860at 6680.960 kb on + strand, within Pf6N2E2_5860at 6681.092 kb on + strandat 6681.093 kb on - strand, within Pf6N2E2_5860at 6681.093 kb on - strand, within Pf6N2E2_5860at 6681.194 kb on + strand, within Pf6N2E2_5860at 6681.194 kb on + strand, within Pf6N2E2_5860at 6681.195 kb on - strand, within Pf6N2E2_5860at 6681.653 kb on - strandat 6681.673 kb on + strandat 6681.673 kb on + strandat 6681.673 kb on + strandat 6681.674 kb on - strandat 6681.674 kb on - strandat 6681.674 kb on - strandat 6681.674 kb on - strandat 6681.674 kb on - strandat 6681.674 kb on - strandat 6681.674 kb on - strandat 6681.955 kb on - strand, within Pf6N2E2_5861at 6681.996 kb on + strand, within Pf6N2E2_5861at 6681.996 kb on + strand, within Pf6N2E2_5861at 6681.996 kb on + strand, within Pf6N2E2_5861at 6681.996 kb on + strand, within Pf6N2E2_5861at 6681.996 kb on + strand, within Pf6N2E2_5861at 6681.996 kb on + strand, within Pf6N2E2_5861at 6681.996 kb on + strand, within Pf6N2E2_5861at 6681.997 kb on - strand, within Pf6N2E2_5861at 6681.997 kb on - strand, within Pf6N2E2_5861at 6681.997 kb on - strand, within Pf6N2E2_5861at 6681.997 kb on - strand, within Pf6N2E2_5861at 6681.997 kb on - strand, within Pf6N2E2_5861at 6681.997 kb on - strand, within Pf6N2E2_5861at 6682.067 kb on + strand, within Pf6N2E2_5861at 6682.104 kb on - strand, within Pf6N2E2_5861at 6682.104 kb on - strand, within Pf6N2E2_5861at 6682.104 kb on - strand, within Pf6N2E2_5861at 6682.104 kb on - strand, within Pf6N2E2_5861at 6682.247 kb on + strand, within Pf6N2E2_5861at 6682.251 kb on - strand, within Pf6N2E2_5861at 6682.294 kb on - strand, within Pf6N2E2_5861at 6682.294 kb on - strand, within Pf6N2E2_5861at 6682.332 kb on - strand, within Pf6N2E2_5861at 6682.332 kb on - strand, within Pf6N2E2_5861at 6682.332 kb on - strand, within Pf6N2E2_5861at 6682.373 kb on + strandat 6682.373 kb on + strandat 6682.373 kb on + strandat 6682.373 kb on + strandat 6682.373 kb on + strandat 6682.373 kb on + strandat 6682.373 kb on + strandat 6682.373 kb on + strandat 6682.374 kb on - strandat 6682.374 kb on - strandat 6682.374 kb on - strandat 6682.374 kb on - strandat 6682.374 kb on - strandat 6682.374 kb on - strandat 6682.375 kb on + strandat 6682.376 kb on - strandat 6682.487 kb on - strandat 6682.494 kb on + strandat 6682.495 kb on - strandat 6682.603 kb on + strand, within Pf6N2E2_5862at 6682.604 kb on - strand, within Pf6N2E2_5862at 6682.738 kb on + strandat 6682.771 kb on + strandat 6682.772 kb on - strandat 6682.772 kb on - strandat 6682.802 kb on - strandat 6682.823 kb on + strandat 6682.823 kb on + strandat 6682.823 kb on + strandat 6682.823 kb on + strandat 6682.824 kb on - strandat 6682.824 kb on - strandat 6682.824 kb on - strandat 6682.824 kb on - strandat 6682.825 kb on + strandat 6682.826 kb on - strandat 6682.826 kb on - strandat 6682.826 kb on - strandat 6682.826 kb on - strandat 6682.826 kb on - strandat 6682.827 kb on + strandat 6682.827 kb on + strandat 6682.827 kb on + strandat 6682.827 kb on + strandat 6682.827 kb on + strandat 6682.828 kb on - strandat 6682.828 kb on - strandat 6682.828 kb on - strandat 6682.828 kb on - strandat 6682.828 kb on - strandat 6682.828 kb on - strandat 6683.105 kb on + strand, within Pf6N2E2_5863at 6683.105 kb on + strand, within Pf6N2E2_5863at 6683.105 kb on + strand, within Pf6N2E2_5863at 6683.106 kb on - strand, within Pf6N2E2_5863at 6683.106 kb on - strand, within Pf6N2E2_5863at 6683.169 kb on + strand, within Pf6N2E2_5863at 6683.169 kb on + strand, within Pf6N2E2_5863at 6683.169 kb on + strand, within Pf6N2E2_5863at 6683.169 kb on + strand, within Pf6N2E2_5863at 6683.170 kb on - strand, within Pf6N2E2_5863at 6683.170 kb on - strand, within Pf6N2E2_5863at 6683.203 kb on - strand, within Pf6N2E2_5863

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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6,680,693 + Pf6N2E2_5860 0.41 +2.7
6,680,693 + Pf6N2E2_5860 0.41 -0.3
6,680,693 + Pf6N2E2_5860 0.41 -0.2
6,680,694 - Pf6N2E2_5860 0.41 +0.5
6,680,694 - Pf6N2E2_5860 0.41 +1.1
6,680,694 - Pf6N2E2_5860 0.41 +0.9
6,680,694 - Pf6N2E2_5860 0.41 -0.9
6,680,694 - Pf6N2E2_5860 0.41 +1.3
6,680,694 - Pf6N2E2_5860 0.41 -0.7
6,680,698 - Pf6N2E2_5860 0.41 -0.8
6,680,698 - Pf6N2E2_5860 0.41 -0.7
6,680,879 + Pf6N2E2_5860 0.55 +0.6
6,680,879 + Pf6N2E2_5860 0.55 +2.7
6,680,879 + Pf6N2E2_5860 0.55 -0.2
6,680,880 - Pf6N2E2_5860 0.55 -0.3
6,680,960 + Pf6N2E2_5860 0.61 +0.6
6,680,960 + Pf6N2E2_5860 0.61 -0.3
6,680,960 + Pf6N2E2_5860 0.61 +1.1
6,681,092 + +0.9
6,681,093 - Pf6N2E2_5860 0.71 +1.0
6,681,093 - Pf6N2E2_5860 0.71 +1.4
6,681,194 + Pf6N2E2_5860 0.79 +0.6
6,681,194 + Pf6N2E2_5860 0.79 +0.3
6,681,195 - Pf6N2E2_5860 0.79 +0.9
6,681,653 - -1.5
6,681,673 + -1.1
6,681,673 + -0.2
6,681,673 + +1.2
6,681,674 - -0.7
6,681,674 - -0.8
6,681,674 - -1.1
6,681,674 - -1.1
6,681,674 - -0.5
6,681,674 - -1.3
6,681,674 - -0.4
6,681,955 - Pf6N2E2_5861 0.36 -2.7
6,681,996 + Pf6N2E2_5861 0.42 -1.9
6,681,996 + Pf6N2E2_5861 0.42 -0.9
6,681,996 + Pf6N2E2_5861 0.42 -3.8
6,681,996 + Pf6N2E2_5861 0.42 -0.4
6,681,996 + Pf6N2E2_5861 0.42 -1.7
6,681,996 + Pf6N2E2_5861 0.42 -1.0
6,681,996 + Pf6N2E2_5861 0.42 -2.4
6,681,997 - Pf6N2E2_5861 0.42 -0.7
6,681,997 - Pf6N2E2_5861 0.42 -2.4
6,681,997 - Pf6N2E2_5861 0.42 -0.4
6,681,997 - Pf6N2E2_5861 0.42 -0.1
6,681,997 - Pf6N2E2_5861 0.42 -0.7
6,681,997 - Pf6N2E2_5861 0.42 -1.4
6,682,067 + Pf6N2E2_5861 0.52 +0.5
6,682,104 - Pf6N2E2_5861 0.57 -1.1
6,682,104 - Pf6N2E2_5861 0.57 -1.1
6,682,104 - Pf6N2E2_5861 0.57 -1.2
6,682,104 - Pf6N2E2_5861 0.57 -1.0
6,682,247 + Pf6N2E2_5861 0.76 -0.4
6,682,251 - Pf6N2E2_5861 0.77 -1.1
6,682,294 - Pf6N2E2_5861 0.82 +0.1
6,682,294 - Pf6N2E2_5861 0.82 -0.7
6,682,332 - Pf6N2E2_5861 0.88 -1.4
6,682,332 - Pf6N2E2_5861 0.88 -0.9
6,682,332 - Pf6N2E2_5861 0.88 -0.8
6,682,373 + +0.9
6,682,373 + -2.0
6,682,373 + -0.5
6,682,373 + -1.7
6,682,373 + -0.8
6,682,373 + +0.5
6,682,373 + +0.0
6,682,373 + -0.1
6,682,374 - +0.3
6,682,374 - -0.8
6,682,374 - -0.1
6,682,374 - +0.3
6,682,374 - +1.2
6,682,374 - -2.7
6,682,375 + +0.2
6,682,376 - -0.1
6,682,487 - +0.2
6,682,494 + -0.2
6,682,495 - +0.9
6,682,603 + Pf6N2E2_5862 0.43 -0.1
6,682,604 - Pf6N2E2_5862 0.43 +0.3
6,682,738 + -1.2
6,682,771 + -0.9
6,682,772 - +0.1
6,682,772 - +0.5
6,682,802 - -0.3
6,682,823 + +0.8
6,682,823 + +0.1
6,682,823 + +0.4
6,682,823 + +0.9
6,682,824 - -0.9
6,682,824 - +0.9
6,682,824 - +0.7
6,682,824 - +1.3
6,682,825 + +0.1
6,682,826 - +0.5
6,682,826 - -0.1
6,682,826 - -0.9
6,682,826 - -0.3
6,682,826 - +0.4
6,682,827 + -1.2
6,682,827 + +0.8
6,682,827 + +0.1
6,682,827 + -0.3
6,682,827 + +0.8
6,682,828 - +0.1
6,682,828 - -0.3
6,682,828 - -0.1
6,682,828 - -1.5
6,682,828 - +0.2
6,682,828 - +0.6
6,683,105 + Pf6N2E2_5863 0.43 +1.9
6,683,105 + Pf6N2E2_5863 0.43 +0.6
6,683,105 + Pf6N2E2_5863 0.43 -0.4
6,683,106 - Pf6N2E2_5863 0.43 +0.1
6,683,106 - Pf6N2E2_5863 0.43 +0.3
6,683,169 + Pf6N2E2_5863 0.56 -0.4
6,683,169 + Pf6N2E2_5863 0.56 -0.5
6,683,169 + Pf6N2E2_5863 0.56 -1.1
6,683,169 + Pf6N2E2_5863 0.56 +0.8
6,683,170 - Pf6N2E2_5863 0.56 +0.6
6,683,170 - Pf6N2E2_5863 0.56 +0.2
6,683,203 - Pf6N2E2_5863 0.63 -0.1

Or see this region's nucleotide sequence