Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5860 and Pf6N2E2_5861 are separated by 216 nucleotides Pf6N2E2_5861 and Pf6N2E2_5862 are separated by 72 nucleotides Pf6N2E2_5862 and Pf6N2E2_5863 are separated by 157 nucleotides Pf6N2E2_5863 and Pf6N2E2_5864 overlap by 4 nucleotides
Pf6N2E2_5860 - Branched-chain amino acid transport system carrier protein, at 6,680,156 to 6,681,469
_5860
Pf6N2E2_5861 - FIG00953885: hypothetical protein, at 6,681,686 to 6,682,423
_5861
Pf6N2E2_5862 - Lipoprotein, putative, at 6,682,496 to 6,682,744
_5862
Pf6N2E2_5863 - FIG00956080: hypothetical protein, at 6,682,902 to 6,683,378
_5863
Pf6N2E2_5864 - FIG00953296: hypothetical protein, at 6,683,375 to 6,683,836
_5864
Position (kb)
6681
6682
6683 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 6680.693 kb on + strand, within Pf6N2E2_5860 at 6680.693 kb on + strand, within Pf6N2E2_5860 at 6680.693 kb on + strand, within Pf6N2E2_5860 at 6680.694 kb on - strand, within Pf6N2E2_5860 at 6680.694 kb on - strand, within Pf6N2E2_5860 at 6680.694 kb on - strand, within Pf6N2E2_5860 at 6680.694 kb on - strand, within Pf6N2E2_5860 at 6680.694 kb on - strand, within Pf6N2E2_5860 at 6680.694 kb on - strand, within Pf6N2E2_5860 at 6680.698 kb on - strand, within Pf6N2E2_5860 at 6680.698 kb on - strand, within Pf6N2E2_5860 at 6680.879 kb on + strand, within Pf6N2E2_5860 at 6680.879 kb on + strand, within Pf6N2E2_5860 at 6680.879 kb on + strand, within Pf6N2E2_5860 at 6680.880 kb on - strand, within Pf6N2E2_5860 at 6680.960 kb on + strand, within Pf6N2E2_5860 at 6680.960 kb on + strand, within Pf6N2E2_5860 at 6680.960 kb on + strand, within Pf6N2E2_5860 at 6681.092 kb on + strand at 6681.093 kb on - strand, within Pf6N2E2_5860 at 6681.093 kb on - strand, within Pf6N2E2_5860 at 6681.194 kb on + strand, within Pf6N2E2_5860 at 6681.194 kb on + strand, within Pf6N2E2_5860 at 6681.195 kb on - strand, within Pf6N2E2_5860 at 6681.653 kb on - strand at 6681.673 kb on + strand at 6681.673 kb on + strand at 6681.673 kb on + strand at 6681.674 kb on - strand at 6681.674 kb on - strand at 6681.674 kb on - strand at 6681.674 kb on - strand at 6681.674 kb on - strand at 6681.674 kb on - strand at 6681.674 kb on - strand at 6681.955 kb on - strand, within Pf6N2E2_5861 at 6681.996 kb on + strand, within Pf6N2E2_5861 at 6681.996 kb on + strand, within Pf6N2E2_5861 at 6681.996 kb on + strand, within Pf6N2E2_5861 at 6681.996 kb on + strand, within Pf6N2E2_5861 at 6681.996 kb on + strand, within Pf6N2E2_5861 at 6681.996 kb on + strand, within Pf6N2E2_5861 at 6681.996 kb on + strand, within Pf6N2E2_5861 at 6681.997 kb on - strand, within Pf6N2E2_5861 at 6681.997 kb on - strand, within Pf6N2E2_5861 at 6681.997 kb on - strand, within Pf6N2E2_5861 at 6681.997 kb on - strand, within Pf6N2E2_5861 at 6681.997 kb on - strand, within Pf6N2E2_5861 at 6681.997 kb on - strand, within Pf6N2E2_5861 at 6682.067 kb on + strand, within Pf6N2E2_5861 at 6682.104 kb on - strand, within Pf6N2E2_5861 at 6682.104 kb on - strand, within Pf6N2E2_5861 at 6682.104 kb on - strand, within Pf6N2E2_5861 at 6682.104 kb on - strand, within Pf6N2E2_5861 at 6682.247 kb on + strand, within Pf6N2E2_5861 at 6682.251 kb on - strand, within Pf6N2E2_5861 at 6682.294 kb on - strand, within Pf6N2E2_5861 at 6682.294 kb on - strand, within Pf6N2E2_5861 at 6682.332 kb on - strand, within Pf6N2E2_5861 at 6682.332 kb on - strand, within Pf6N2E2_5861 at 6682.332 kb on - strand, within Pf6N2E2_5861 at 6682.373 kb on + strand at 6682.373 kb on + strand at 6682.373 kb on + strand at 6682.373 kb on + strand at 6682.373 kb on + strand at 6682.373 kb on + strand at 6682.373 kb on + strand at 6682.373 kb on + strand at 6682.374 kb on - strand at 6682.374 kb on - strand at 6682.374 kb on - strand at 6682.374 kb on - strand at 6682.374 kb on - strand at 6682.374 kb on - strand at 6682.375 kb on + strand at 6682.376 kb on - strand at 6682.487 kb on - strand at 6682.494 kb on + strand at 6682.495 kb on - strand at 6682.603 kb on + strand, within Pf6N2E2_5862 at 6682.604 kb on - strand, within Pf6N2E2_5862 at 6682.738 kb on + strand at 6682.771 kb on + strand at 6682.772 kb on - strand at 6682.772 kb on - strand at 6682.802 kb on - strand at 6682.823 kb on + strand at 6682.823 kb on + strand at 6682.823 kb on + strand at 6682.823 kb on + strand at 6682.824 kb on - strand at 6682.824 kb on - strand at 6682.824 kb on - strand at 6682.824 kb on - strand at 6682.825 kb on + strand at 6682.826 kb on - strand at 6682.826 kb on - strand at 6682.826 kb on - strand at 6682.826 kb on - strand at 6682.826 kb on - strand at 6682.827 kb on + strand at 6682.827 kb on + strand at 6682.827 kb on + strand at 6682.827 kb on + strand at 6682.827 kb on + strand at 6682.828 kb on - strand at 6682.828 kb on - strand at 6682.828 kb on - strand at 6682.828 kb on - strand at 6682.828 kb on - strand at 6682.828 kb on - strand at 6683.105 kb on + strand, within Pf6N2E2_5863 at 6683.105 kb on + strand, within Pf6N2E2_5863 at 6683.105 kb on + strand, within Pf6N2E2_5863 at 6683.106 kb on - strand, within Pf6N2E2_5863 at 6683.106 kb on - strand, within Pf6N2E2_5863 at 6683.169 kb on + strand, within Pf6N2E2_5863 at 6683.169 kb on + strand, within Pf6N2E2_5863 at 6683.169 kb on + strand, within Pf6N2E2_5863 at 6683.169 kb on + strand, within Pf6N2E2_5863 at 6683.170 kb on - strand, within Pf6N2E2_5863 at 6683.170 kb on - strand, within Pf6N2E2_5863 at 6683.203 kb on - strand, within Pf6N2E2_5863
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 6,680,693 + Pf6N2E2_5860 0.41 +2.7 6,680,693 + Pf6N2E2_5860 0.41 -0.3 6,680,693 + Pf6N2E2_5860 0.41 -0.2 6,680,694 - Pf6N2E2_5860 0.41 +0.5 6,680,694 - Pf6N2E2_5860 0.41 +1.1 6,680,694 - Pf6N2E2_5860 0.41 +0.9 6,680,694 - Pf6N2E2_5860 0.41 -0.9 6,680,694 - Pf6N2E2_5860 0.41 +1.3 6,680,694 - Pf6N2E2_5860 0.41 -0.7 6,680,698 - Pf6N2E2_5860 0.41 -0.8 6,680,698 - Pf6N2E2_5860 0.41 -0.7 6,680,879 + Pf6N2E2_5860 0.55 +0.6 6,680,879 + Pf6N2E2_5860 0.55 +2.7 6,680,879 + Pf6N2E2_5860 0.55 -0.2 6,680,880 - Pf6N2E2_5860 0.55 -0.3 6,680,960 + Pf6N2E2_5860 0.61 +0.6 6,680,960 + Pf6N2E2_5860 0.61 -0.3 6,680,960 + Pf6N2E2_5860 0.61 +1.1 6,681,092 + +0.9 6,681,093 - Pf6N2E2_5860 0.71 +1.0 6,681,093 - Pf6N2E2_5860 0.71 +1.4 6,681,194 + Pf6N2E2_5860 0.79 +0.6 6,681,194 + Pf6N2E2_5860 0.79 +0.3 6,681,195 - Pf6N2E2_5860 0.79 +0.9 6,681,653 - -1.5 6,681,673 + -1.1 6,681,673 + -0.2 6,681,673 + +1.2 6,681,674 - -0.7 6,681,674 - -0.8 6,681,674 - -1.1 6,681,674 - -1.1 6,681,674 - -0.5 6,681,674 - -1.3 6,681,674 - -0.4 6,681,955 - Pf6N2E2_5861 0.36 -2.7 6,681,996 + Pf6N2E2_5861 0.42 -1.9 6,681,996 + Pf6N2E2_5861 0.42 -0.9 6,681,996 + Pf6N2E2_5861 0.42 -3.8 6,681,996 + Pf6N2E2_5861 0.42 -0.4 6,681,996 + Pf6N2E2_5861 0.42 -1.7 6,681,996 + Pf6N2E2_5861 0.42 -1.0 6,681,996 + Pf6N2E2_5861 0.42 -2.4 6,681,997 - Pf6N2E2_5861 0.42 -0.7 6,681,997 - Pf6N2E2_5861 0.42 -2.4 6,681,997 - Pf6N2E2_5861 0.42 -0.4 6,681,997 - Pf6N2E2_5861 0.42 -0.1 6,681,997 - Pf6N2E2_5861 0.42 -0.7 6,681,997 - Pf6N2E2_5861 0.42 -1.4 6,682,067 + Pf6N2E2_5861 0.52 +0.5 6,682,104 - Pf6N2E2_5861 0.57 -1.1 6,682,104 - Pf6N2E2_5861 0.57 -1.1 6,682,104 - Pf6N2E2_5861 0.57 -1.2 6,682,104 - Pf6N2E2_5861 0.57 -1.0 6,682,247 + Pf6N2E2_5861 0.76 -0.4 6,682,251 - Pf6N2E2_5861 0.77 -1.1 6,682,294 - Pf6N2E2_5861 0.82 +0.1 6,682,294 - Pf6N2E2_5861 0.82 -0.7 6,682,332 - Pf6N2E2_5861 0.88 -1.4 6,682,332 - Pf6N2E2_5861 0.88 -0.9 6,682,332 - Pf6N2E2_5861 0.88 -0.8 6,682,373 + +0.9 6,682,373 + -2.0 6,682,373 + -0.5 6,682,373 + -1.7 6,682,373 + -0.8 6,682,373 + +0.5 6,682,373 + +0.0 6,682,373 + -0.1 6,682,374 - +0.3 6,682,374 - -0.8 6,682,374 - -0.1 6,682,374 - +0.3 6,682,374 - +1.2 6,682,374 - -2.7 6,682,375 + +0.2 6,682,376 - -0.1 6,682,487 - +0.2 6,682,494 + -0.2 6,682,495 - +0.9 6,682,603 + Pf6N2E2_5862 0.43 -0.1 6,682,604 - Pf6N2E2_5862 0.43 +0.3 6,682,738 + -1.2 6,682,771 + -0.9 6,682,772 - +0.1 6,682,772 - +0.5 6,682,802 - -0.3 6,682,823 + +0.8 6,682,823 + +0.1 6,682,823 + +0.4 6,682,823 + +0.9 6,682,824 - -0.9 6,682,824 - +0.9 6,682,824 - +0.7 6,682,824 - +1.3 6,682,825 + +0.1 6,682,826 - +0.5 6,682,826 - -0.1 6,682,826 - -0.9 6,682,826 - -0.3 6,682,826 - +0.4 6,682,827 + -1.2 6,682,827 + +0.8 6,682,827 + +0.1 6,682,827 + -0.3 6,682,827 + +0.8 6,682,828 - +0.1 6,682,828 - -0.3 6,682,828 - -0.1 6,682,828 - -1.5 6,682,828 - +0.2 6,682,828 - +0.6 6,683,105 + Pf6N2E2_5863 0.43 +1.9 6,683,105 + Pf6N2E2_5863 0.43 +0.6 6,683,105 + Pf6N2E2_5863 0.43 -0.4 6,683,106 - Pf6N2E2_5863 0.43 +0.1 6,683,106 - Pf6N2E2_5863 0.43 +0.3 6,683,169 + Pf6N2E2_5863 0.56 -0.4 6,683,169 + Pf6N2E2_5863 0.56 -0.5 6,683,169 + Pf6N2E2_5863 0.56 -1.1 6,683,169 + Pf6N2E2_5863 0.56 +0.8 6,683,170 - Pf6N2E2_5863 0.56 +0.6 6,683,170 - Pf6N2E2_5863 0.56 +0.2 6,683,203 - Pf6N2E2_5863 0.63 -0.1
Or see this region's nucleotide sequence