Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5571

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5570 and Pf6N2E2_5571 overlap by 18 nucleotidesPf6N2E2_5571 and Pf6N2E2_5572 are separated by 345 nucleotides Pf6N2E2_5570 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 6,388,473 to 6,389,387 _5570 Pf6N2E2_5571 - hypothetical protein, at 6,389,370 to 6,389,504 _5571 Pf6N2E2_5572 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 6,389,850 to 6,391,388 _5572 Position (kb) 6389 6390Strain fitness (log2 ratio) -2 -1 0 1at 6388.457 kb on + strandat 6388.458 kb on - strandat 6388.458 kb on - strandat 6388.499 kb on + strandat 6388.597 kb on + strand, within Pf6N2E2_5570at 6388.624 kb on + strand, within Pf6N2E2_5570at 6388.625 kb on - strand, within Pf6N2E2_5570at 6388.625 kb on - strand, within Pf6N2E2_5570at 6388.625 kb on - strand, within Pf6N2E2_5570at 6388.625 kb on - strand, within Pf6N2E2_5570at 6388.625 kb on - strand, within Pf6N2E2_5570at 6388.694 kb on - strand, within Pf6N2E2_5570at 6388.960 kb on + strand, within Pf6N2E2_5570at 6388.960 kb on + strand, within Pf6N2E2_5570at 6388.960 kb on + strand, within Pf6N2E2_5570at 6388.961 kb on - strand, within Pf6N2E2_5570at 6388.961 kb on - strand, within Pf6N2E2_5570at 6388.961 kb on - strand, within Pf6N2E2_5570at 6388.961 kb on - strand, within Pf6N2E2_5570at 6389.233 kb on + strand, within Pf6N2E2_5570at 6389.233 kb on + strand, within Pf6N2E2_5570at 6389.234 kb on - strand, within Pf6N2E2_5570at 6389.381 kb on + strandat 6389.441 kb on + strand, within Pf6N2E2_5571at 6389.442 kb on - strand, within Pf6N2E2_5571at 6389.442 kb on - strand, within Pf6N2E2_5571at 6389.558 kb on + strandat 6389.582 kb on - strandat 6389.708 kb on + strandat 6389.709 kb on - strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.752 kb on + strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.753 kb on - strandat 6389.758 kb on + strandat 6389.758 kb on + strandat 6389.758 kb on + strandat 6389.758 kb on + strandat 6389.793 kb on + strandat 6389.793 kb on + strandat 6389.793 kb on + strandat 6389.794 kb on - strandat 6390.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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6,388,457 + -0.2
6,388,458 - +1.2
6,388,458 - -0.6
6,388,499 + +1.0
6,388,597 + Pf6N2E2_5570 0.14 +0.4
6,388,624 + Pf6N2E2_5570 0.17 +1.7
6,388,625 - Pf6N2E2_5570 0.17 +1.0
6,388,625 - Pf6N2E2_5570 0.17 -0.5
6,388,625 - Pf6N2E2_5570 0.17 +0.9
6,388,625 - Pf6N2E2_5570 0.17 +0.5
6,388,625 - Pf6N2E2_5570 0.17 +0.2
6,388,694 - Pf6N2E2_5570 0.24 +0.5
6,388,960 + Pf6N2E2_5570 0.53 +0.0
6,388,960 + Pf6N2E2_5570 0.53 +0.1
6,388,960 + Pf6N2E2_5570 0.53 -0.5
6,388,961 - Pf6N2E2_5570 0.53 -0.9
6,388,961 - Pf6N2E2_5570 0.53 +0.0
6,388,961 - Pf6N2E2_5570 0.53 -0.2
6,388,961 - Pf6N2E2_5570 0.53 +0.7
6,389,233 + Pf6N2E2_5570 0.83 +0.1
6,389,233 + Pf6N2E2_5570 0.83 +0.8
6,389,234 - Pf6N2E2_5570 0.83 +0.4
6,389,381 + -1.9
6,389,441 + Pf6N2E2_5571 0.53 -0.9
6,389,442 - Pf6N2E2_5571 0.53 +1.1
6,389,442 - Pf6N2E2_5571 0.53 -1.0
6,389,558 + -0.2
6,389,582 - -0.0
6,389,708 + -0.7
6,389,709 - +0.5
6,389,752 + +0.5
6,389,752 + +0.5
6,389,752 + +0.1
6,389,752 + -0.2
6,389,752 + +0.0
6,389,752 + +0.1
6,389,752 + +0.5
6,389,752 + -0.0
6,389,752 + +0.0
6,389,753 - -0.9
6,389,753 - +0.8
6,389,753 - -0.1
6,389,753 - -0.4
6,389,753 - +0.2
6,389,753 - -0.3
6,389,753 - +0.4
6,389,753 - +1.0
6,389,753 - +0.8
6,389,753 - +0.2
6,389,758 + -1.1
6,389,758 + -0.8
6,389,758 + -0.0
6,389,758 + +1.7
6,389,793 + -0.2
6,389,793 + -1.2
6,389,793 + +0.4
6,389,794 - -0.0
6,390,422 - -0.9

Or see this region's nucleotide sequence