Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5468

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5467 and Pf6N2E2_5468 are separated by 271 nucleotidesPf6N2E2_5468 and Pf6N2E2_5469 are separated by 24 nucleotidesPf6N2E2_5469 and Pf6N2E2_5470 overlap by 4 nucleotides Pf6N2E2_5467 - Response regulator, at 6,282,164 to 6,283,531 _5467 Pf6N2E2_5468 - Nudix hydrolase family protein PA3470, at 6,283,803 to 6,284,219 _5468 Pf6N2E2_5469 - L-lysine permease, at 6,284,244 to 6,284,882 _5469 Pf6N2E2_5470 - acetyltransferase, GNAT family, at 6,284,879 to 6,285,376 _5470 Position (kb) 6283 6284 6285Strain fitness (log2 ratio) -2 -1 0 1 2at 6282.821 kb on + strand, within Pf6N2E2_5467at 6282.821 kb on + strand, within Pf6N2E2_5467at 6282.822 kb on - strand, within Pf6N2E2_5467at 6282.822 kb on - strand, within Pf6N2E2_5467at 6282.822 kb on - strand, within Pf6N2E2_5467at 6282.824 kb on - strand, within Pf6N2E2_5467at 6282.884 kb on + strand, within Pf6N2E2_5467at 6282.884 kb on + strand, within Pf6N2E2_5467at 6282.885 kb on - strand, within Pf6N2E2_5467at 6282.966 kb on - strand, within Pf6N2E2_5467at 6283.202 kb on + strand, within Pf6N2E2_5467at 6283.202 kb on + strand, within Pf6N2E2_5467at 6283.202 kb on + strand, within Pf6N2E2_5467at 6283.202 kb on + strand, within Pf6N2E2_5467at 6283.203 kb on - strand, within Pf6N2E2_5467at 6283.214 kb on + strand, within Pf6N2E2_5467at 6283.214 kb on + strand, within Pf6N2E2_5467at 6283.229 kb on + strand, within Pf6N2E2_5467at 6283.275 kb on - strand, within Pf6N2E2_5467at 6283.275 kb on - strand, within Pf6N2E2_5467at 6283.685 kb on + strandat 6283.685 kb on + strandat 6283.685 kb on + strandat 6283.685 kb on + strandat 6283.686 kb on - strandat 6283.691 kb on + strandat 6283.692 kb on - strandat 6283.692 kb on - strandat 6283.763 kb on - strandat 6283.763 kb on - strandat 6283.976 kb on - strand, within Pf6N2E2_5468at 6284.046 kb on - strand, within Pf6N2E2_5468at 6284.062 kb on + strand, within Pf6N2E2_5468at 6284.191 kb on - strandat 6284.206 kb on + strandat 6284.206 kb on + strandat 6284.206 kb on + strandat 6284.207 kb on - strandat 6284.207 kb on - strandat 6284.207 kb on - strandat 6284.207 kb on - strandat 6284.207 kb on - strandat 6284.210 kb on + strandat 6284.211 kb on - strandat 6284.211 kb on - strandat 6284.211 kb on - strandat 6284.211 kb on - strandat 6284.297 kb on - strandat 6284.297 kb on - strandat 6284.322 kb on + strand, within Pf6N2E2_5469at 6284.322 kb on + strand, within Pf6N2E2_5469at 6284.322 kb on + strand, within Pf6N2E2_5469at 6284.322 kb on + strand, within Pf6N2E2_5469at 6284.322 kb on + strand, within Pf6N2E2_5469at 6284.322 kb on + strand, within Pf6N2E2_5469at 6284.323 kb on - strand, within Pf6N2E2_5469at 6284.323 kb on - strand, within Pf6N2E2_5469at 6284.323 kb on - strand, within Pf6N2E2_5469at 6284.323 kb on - strand, within Pf6N2E2_5469at 6284.461 kb on - strand, within Pf6N2E2_5469at 6284.467 kb on + strand, within Pf6N2E2_5469at 6284.467 kb on + strand, within Pf6N2E2_5469at 6284.634 kb on + strand, within Pf6N2E2_5469at 6284.634 kb on + strand, within Pf6N2E2_5469at 6284.634 kb on + strand, within Pf6N2E2_5469at 6284.634 kb on + strand, within Pf6N2E2_5469at 6284.634 kb on + strand, within Pf6N2E2_5469at 6284.635 kb on - strand, within Pf6N2E2_5469at 6284.697 kb on - strand, within Pf6N2E2_5469at 6284.918 kb on + strandat 6284.942 kb on + strand, within Pf6N2E2_5470at 6284.942 kb on + strand, within Pf6N2E2_5470at 6284.942 kb on + strand, within Pf6N2E2_5470at 6285.039 kb on + strand, within Pf6N2E2_5470at 6285.039 kb on + strand, within Pf6N2E2_5470at 6285.039 kb on + strand, within Pf6N2E2_5470at 6285.040 kb on - strand, within Pf6N2E2_5470at 6285.040 kb on - strand, within Pf6N2E2_5470at 6285.040 kb on - strand, within Pf6N2E2_5470at 6285.040 kb on - strand, within Pf6N2E2_5470at 6285.040 kb on - strand, within Pf6N2E2_5470at 6285.140 kb on + strand, within Pf6N2E2_5470at 6285.140 kb on + strand, within Pf6N2E2_5470at 6285.140 kb on + strand, within Pf6N2E2_5470at 6285.141 kb on - strand, within Pf6N2E2_5470at 6285.141 kb on - strand, within Pf6N2E2_5470at 6285.141 kb on - strand, within Pf6N2E2_5470at 6285.141 kb on - strand, within Pf6N2E2_5470at 6285.141 kb on - strand, within Pf6N2E2_5470

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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6,282,821 + Pf6N2E2_5467 0.48 +0.6
6,282,821 + Pf6N2E2_5467 0.48 +1.0
6,282,822 - Pf6N2E2_5467 0.48 +1.1
6,282,822 - Pf6N2E2_5467 0.48 +0.4
6,282,822 - Pf6N2E2_5467 0.48 -0.2
6,282,824 - Pf6N2E2_5467 0.48 -0.5
6,282,884 + Pf6N2E2_5467 0.53 +1.4
6,282,884 + Pf6N2E2_5467 0.53 +0.5
6,282,885 - Pf6N2E2_5467 0.53 -1.0
6,282,966 - Pf6N2E2_5467 0.59 -0.1
6,283,202 + Pf6N2E2_5467 0.76 -0.1
6,283,202 + Pf6N2E2_5467 0.76 -0.1
6,283,202 + Pf6N2E2_5467 0.76 -0.3
6,283,202 + Pf6N2E2_5467 0.76 +0.5
6,283,203 - Pf6N2E2_5467 0.76 +1.0
6,283,214 + Pf6N2E2_5467 0.77 -1.0
6,283,214 + Pf6N2E2_5467 0.77 -0.4
6,283,229 + Pf6N2E2_5467 0.78 +2.1
6,283,275 - Pf6N2E2_5467 0.81 -1.5
6,283,275 - Pf6N2E2_5467 0.81 +0.3
6,283,685 + -0.4
6,283,685 + -0.5
6,283,685 + +0.3
6,283,685 + -0.4
6,283,686 - +0.5
6,283,691 + +1.7
6,283,692 - +0.1
6,283,692 - +1.1
6,283,763 - -0.4
6,283,763 - +0.8
6,283,976 - Pf6N2E2_5468 0.41 -0.1
6,284,046 - Pf6N2E2_5468 0.58 -1.1
6,284,062 + Pf6N2E2_5468 0.62 -0.7
6,284,191 - -0.5
6,284,206 + -0.9
6,284,206 + +0.2
6,284,206 + +0.3
6,284,207 - -0.1
6,284,207 - +0.6
6,284,207 - +0.8
6,284,207 - -2.1
6,284,207 - -1.1
6,284,210 + +0.2
6,284,211 - -0.2
6,284,211 - -0.4
6,284,211 - +1.0
6,284,211 - +0.1
6,284,297 - +0.3
6,284,297 - +0.3
6,284,322 + Pf6N2E2_5469 0.12 +0.8
6,284,322 + Pf6N2E2_5469 0.12 +0.5
6,284,322 + Pf6N2E2_5469 0.12 +0.1
6,284,322 + Pf6N2E2_5469 0.12 +1.4
6,284,322 + Pf6N2E2_5469 0.12 -0.2
6,284,322 + Pf6N2E2_5469 0.12 -0.7
6,284,323 - Pf6N2E2_5469 0.12 -0.2
6,284,323 - Pf6N2E2_5469 0.12 +1.2
6,284,323 - Pf6N2E2_5469 0.12 -0.1
6,284,323 - Pf6N2E2_5469 0.12 -0.1
6,284,461 - Pf6N2E2_5469 0.34 +0.2
6,284,467 + Pf6N2E2_5469 0.35 +0.3
6,284,467 + Pf6N2E2_5469 0.35 +0.5
6,284,634 + Pf6N2E2_5469 0.61 +0.1
6,284,634 + Pf6N2E2_5469 0.61 +0.5
6,284,634 + Pf6N2E2_5469 0.61 +0.8
6,284,634 + Pf6N2E2_5469 0.61 +0.6
6,284,634 + Pf6N2E2_5469 0.61 +0.9
6,284,635 - Pf6N2E2_5469 0.61 +1.1
6,284,697 - Pf6N2E2_5469 0.71 -1.6
6,284,918 + -0.7
6,284,942 + Pf6N2E2_5470 0.13 +0.4
6,284,942 + Pf6N2E2_5470 0.13 +0.1
6,284,942 + Pf6N2E2_5470 0.13 -0.8
6,285,039 + Pf6N2E2_5470 0.32 -0.8
6,285,039 + Pf6N2E2_5470 0.32 +0.7
6,285,039 + Pf6N2E2_5470 0.32 +0.0
6,285,040 - Pf6N2E2_5470 0.32 +0.0
6,285,040 - Pf6N2E2_5470 0.32 -0.2
6,285,040 - Pf6N2E2_5470 0.32 +0.3
6,285,040 - Pf6N2E2_5470 0.32 -1.6
6,285,040 - Pf6N2E2_5470 0.32 -0.3
6,285,140 + Pf6N2E2_5470 0.52 +0.2
6,285,140 + Pf6N2E2_5470 0.52 +1.7
6,285,140 + Pf6N2E2_5470 0.52 -0.4
6,285,141 - Pf6N2E2_5470 0.53 -0.9
6,285,141 - Pf6N2E2_5470 0.53 +0.7
6,285,141 - Pf6N2E2_5470 0.53 +1.2
6,285,141 - Pf6N2E2_5470 0.53 +0.4
6,285,141 - Pf6N2E2_5470 0.53 +1.9

Or see this region's nucleotide sequence