Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5342 and Pf6N2E2_5343 overlap by 4 nucleotides Pf6N2E2_5343 and Pf6N2E2_5344 are separated by 102 nucleotides Pf6N2E2_5344 and Pf6N2E2_5345 overlap by 1 nucleotides
Pf6N2E2_5342 - 21 kDa hemolysin precursor, at 6,136,430 to 6,137,008
_5342
Pf6N2E2_5343 - Phosphoheptose isomerase (EC 5.3.1.-), at 6,137,005 to 6,137,598
_5343
Pf6N2E2_5344 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 6,137,701 to 6,138,063
_5344
Pf6N2E2_5345 - LppC putative lipoprotein, at 6,138,063 to 6,139,874
_5345
Position (kb)
6137
6138
6139 Strain fitness (log2 ratio)
-1
0
1 at 6136.704 kb on - strand, within Pf6N2E2_5342 at 6136.704 kb on - strand, within Pf6N2E2_5342 at 6136.704 kb on - strand, within Pf6N2E2_5342 at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.611 kb on - strand at 6137.615 kb on - strand at 6137.814 kb on - strand, within Pf6N2E2_5344 at 6137.884 kb on - strand, within Pf6N2E2_5344 at 6137.912 kb on - strand, within Pf6N2E2_5344 at 6137.912 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.915 kb on - strand, within Pf6N2E2_5344 at 6137.920 kb on - strand, within Pf6N2E2_5344 at 6137.920 kb on - strand, within Pf6N2E2_5344 at 6138.132 kb on + strand at 6138.237 kb on + strand at 6138.237 kb on + strand at 6138.250 kb on + strand, within Pf6N2E2_5345 at 6138.250 kb on + strand, within Pf6N2E2_5345 at 6138.370 kb on + strand, within Pf6N2E2_5345 at 6138.371 kb on - strand, within Pf6N2E2_5345 at 6138.416 kb on - strand, within Pf6N2E2_5345 at 6138.436 kb on + strand, within Pf6N2E2_5345 at 6138.437 kb on - strand, within Pf6N2E2_5345 at 6138.847 kb on + strand, within Pf6N2E2_5345 at 6138.847 kb on + strand, within Pf6N2E2_5345 at 6138.847 kb on + strand, within Pf6N2E2_5345 at 6138.848 kb on - strand, within Pf6N2E2_5345 at 6138.848 kb on - strand, within Pf6N2E2_5345 at 6138.848 kb on - strand, within Pf6N2E2_5345 at 6138.996 kb on + strand, within Pf6N2E2_5345 at 6138.997 kb on + strand, within Pf6N2E2_5345 at 6138.997 kb on + strand, within Pf6N2E2_5345 at 6138.998 kb on - strand, within Pf6N2E2_5345 at 6139.043 kb on - strand, within Pf6N2E2_5345 at 6139.043 kb on - strand, within Pf6N2E2_5345
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 6,136,704 - Pf6N2E2_5342 0.47 +0.7 6,136,704 - Pf6N2E2_5342 0.47 -0.8 6,136,704 - Pf6N2E2_5342 0.47 +0.7 6,137,611 - +0.2 6,137,611 - -0.2 6,137,611 - +1.4 6,137,611 - +1.3 6,137,611 - +0.3 6,137,611 - -0.1 6,137,615 - +1.5 6,137,814 - Pf6N2E2_5344 0.31 +0.8 6,137,884 - Pf6N2E2_5344 0.50 +0.2 6,137,912 - Pf6N2E2_5344 0.58 +0.2 6,137,912 - Pf6N2E2_5344 0.58 +0.3 6,137,915 - Pf6N2E2_5344 0.59 +0.9 6,137,915 - Pf6N2E2_5344 0.59 -0.1 6,137,915 - Pf6N2E2_5344 0.59 -1.6 6,137,915 - Pf6N2E2_5344 0.59 +0.5 6,137,915 - Pf6N2E2_5344 0.59 +0.7 6,137,915 - Pf6N2E2_5344 0.59 -1.1 6,137,920 - Pf6N2E2_5344 0.60 -1.2 6,137,920 - Pf6N2E2_5344 0.60 +0.9 6,138,132 + +0.3 6,138,237 + +0.7 6,138,237 + +1.1 6,138,250 + Pf6N2E2_5345 0.10 -0.8 6,138,250 + Pf6N2E2_5345 0.10 +0.8 6,138,370 + Pf6N2E2_5345 0.17 +1.7 6,138,371 - Pf6N2E2_5345 0.17 +0.8 6,138,416 - Pf6N2E2_5345 0.19 +1.4 6,138,436 + Pf6N2E2_5345 0.21 +1.2 6,138,437 - Pf6N2E2_5345 0.21 -1.0 6,138,847 + Pf6N2E2_5345 0.43 +1.0 6,138,847 + Pf6N2E2_5345 0.43 +0.6 6,138,847 + Pf6N2E2_5345 0.43 +0.8 6,138,848 - Pf6N2E2_5345 0.43 +1.1 6,138,848 - Pf6N2E2_5345 0.43 +0.6 6,138,848 - Pf6N2E2_5345 0.43 +0.6 6,138,996 + Pf6N2E2_5345 0.51 +0.0 6,138,997 + Pf6N2E2_5345 0.52 +0.7 6,138,997 + Pf6N2E2_5345 0.52 -0.0 6,138,998 - Pf6N2E2_5345 0.52 +1.7 6,139,043 - Pf6N2E2_5345 0.54 +1.2 6,139,043 - Pf6N2E2_5345 0.54 +0.2
Or see this region's nucleotide sequence