Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_533

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_531 and Pf6N2E2_532 are separated by 484 nucleotidesPf6N2E2_532 and Pf6N2E2_533 are separated by 179 nucleotidesPf6N2E2_533 and Pf6N2E2_534 overlap by 4 nucleotidesPf6N2E2_534 and Pf6N2E2_535 overlap by 4 nucleotidesPf6N2E2_535 and Pf6N2E2_536 overlap by 4 nucleotides Pf6N2E2_531 - FIG00966599: hypothetical protein, at 600,519 to 600,956 _531 Pf6N2E2_532 - Na(+) H(+) antiporter subunit G, at 601,441 to 601,554 _532 Pf6N2E2_533 - Na(+) H(+) antiporter subunit G, at 601,734 to 602,087 _533 Pf6N2E2_534 - Na(+) H(+) antiporter subunit F, at 602,084 to 602,362 _534 Pf6N2E2_535 - Na(+) H(+) antiporter subunit E, at 602,359 to 602,847 _535 Pf6N2E2_536 - Na(+) H(+) antiporter subunit D, at 602,844 to 604,529 _536 Position (kb) 601 602 603Strain fitness (log2 ratio) -1 0 1at 601.169 kb on + strandat 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 602.175 kb on + strand, within Pf6N2E2_534at 602.176 kb on - strand, within Pf6N2E2_534at 602.176 kb on - strand, within Pf6N2E2_534at 602.176 kb on - strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.239 kb on - strand, within Pf6N2E2_534at 602.239 kb on - strand, within Pf6N2E2_534at 602.390 kb on + strandat 602.391 kb on - strandat 602.391 kb on - strandat 602.920 kb on + strandat 602.920 kb on + strandat 602.920 kb on + strandat 602.920 kb on + strandat 602.921 kb on - strandat 602.921 kb on - strandat 602.921 kb on - strandat 602.921 kb on - strandat 602.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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601,169 + -1.0
601,979 - Pf6N2E2_533 0.69 -1.3
601,979 - Pf6N2E2_533 0.69 +1.1
601,979 - Pf6N2E2_533 0.69 -1.0
601,979 - Pf6N2E2_533 0.69 -0.8
601,979 - Pf6N2E2_533 0.69 -0.8
602,175 + Pf6N2E2_534 0.33 +0.7
602,176 - Pf6N2E2_534 0.33 -0.5
602,176 - Pf6N2E2_534 0.33 +0.5
602,176 - Pf6N2E2_534 0.33 +0.5
602,232 + Pf6N2E2_534 0.53 -0.6
602,232 + Pf6N2E2_534 0.53 -0.7
602,232 + Pf6N2E2_534 0.53 +1.3
602,232 + Pf6N2E2_534 0.53 -0.5
602,232 + Pf6N2E2_534 0.53 -0.0
602,232 + Pf6N2E2_534 0.53 -1.5
602,232 + Pf6N2E2_534 0.53 -0.9
602,233 - Pf6N2E2_534 0.53 -0.6
602,233 - Pf6N2E2_534 0.53 -1.5
602,233 - Pf6N2E2_534 0.53 -0.5
602,233 - Pf6N2E2_534 0.53 +0.4
602,233 - Pf6N2E2_534 0.53 +0.0
602,239 - Pf6N2E2_534 0.56 -1.3
602,239 - Pf6N2E2_534 0.56 -0.4
602,390 + +0.7
602,391 - +0.9
602,391 - -1.3
602,920 + +0.4
602,920 + -0.0
602,920 + -0.7
602,920 + -0.1
602,921 - +0.7
602,921 - -0.1
602,921 - +0.4
602,921 - +0.1
602,921 - -0.8

Or see this region's nucleotide sequence