Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5252

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5249 and Pf6N2E2_5250 are separated by 142 nucleotidesPf6N2E2_5250 and Pf6N2E2_5251 are separated by 10 nucleotidesPf6N2E2_5251 and Pf6N2E2_5252 are separated by 39 nucleotidesPf6N2E2_5252 and Pf6N2E2_5253 are separated by 77 nucleotidesPf6N2E2_5253 and Pf6N2E2_5254 are separated by 10 nucleotides Pf6N2E2_5249 - Glycerol-3-phosphate O-acyltransferase, at 6,043,273 to 6,044,436 _5249 Pf6N2E2_5250 - Restriction endonuclease, at 6,044,579 to 6,044,761 _5250 Pf6N2E2_5251 - FIG00954698: hypothetical protein, at 6,044,772 to 6,045,032 _5251 Pf6N2E2_5252 - FIG00956396: hypothetical protein, at 6,045,072 to 6,045,695 _5252 Pf6N2E2_5253 - Additional periplasmic component NikK of nickel ECF transporter, at 6,045,773 to 6,046,492 _5253 Pf6N2E2_5254 - Ferrichrome-iron receptor, at 6,046,503 to 6,048,608 _5254 Position (kb) 6045 6046Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6044.466 kb on - strandat 6044.466 kb on - strandat 6044.466 kb on - strandat 6044.466 kb on - strandat 6044.470 kb on - strandat 6044.470 kb on - strandat 6044.470 kb on - strandat 6044.470 kb on - strandat 6044.512 kb on - strandat 6044.512 kb on - strandat 6044.527 kb on - strandat 6044.553 kb on - strandat 6044.553 kb on - strandat 6044.553 kb on - strandat 6044.598 kb on - strand, within Pf6N2E2_5250at 6044.609 kb on + strand, within Pf6N2E2_5250at 6044.610 kb on - strand, within Pf6N2E2_5250at 6044.663 kb on + strand, within Pf6N2E2_5250at 6044.663 kb on + strand, within Pf6N2E2_5250at 6044.663 kb on + strand, within Pf6N2E2_5250at 6044.663 kb on + strand, within Pf6N2E2_5250at 6044.664 kb on - strand, within Pf6N2E2_5250at 6044.664 kb on - strand, within Pf6N2E2_5250at 6044.664 kb on - strand, within Pf6N2E2_5250at 6044.664 kb on - strandat 6044.784 kb on + strandat 6044.785 kb on - strandat 6044.943 kb on + strand, within Pf6N2E2_5251at 6044.967 kb on + strand, within Pf6N2E2_5251at 6044.968 kb on - strand, within Pf6N2E2_5251at 6044.968 kb on - strand, within Pf6N2E2_5251at 6045.009 kb on + strandat 6045.009 kb on + strandat 6045.009 kb on + strandat 6045.009 kb on + strandat 6045.009 kb on + strandat 6045.010 kb on - strandat 6045.030 kb on + strandat 6045.030 kb on + strandat 6045.030 kb on + strandat 6045.031 kb on - strandat 6045.366 kb on + strand, within Pf6N2E2_5252at 6045.366 kb on + strand, within Pf6N2E2_5252at 6045.367 kb on - strand, within Pf6N2E2_5252at 6045.644 kb on + strandat 6045.644 kb on + strandat 6045.760 kb on + strandat 6045.760 kb on + strandat 6045.760 kb on + strandat 6045.760 kb on + strandat 6045.760 kb on + strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.761 kb on - strandat 6045.938 kb on + strand, within Pf6N2E2_5253at 6046.113 kb on + strand, within Pf6N2E2_5253at 6046.113 kb on + strand, within Pf6N2E2_5253at 6046.113 kb on + strand, within Pf6N2E2_5253at 6046.114 kb on - strand, within Pf6N2E2_5253at 6046.114 kb on - strand, within Pf6N2E2_5253at 6046.114 kb on - strand, within Pf6N2E2_5253at 6046.114 kb on - strand, within Pf6N2E2_5253at 6046.128 kb on + strand, within Pf6N2E2_5253at 6046.128 kb on + strand, within Pf6N2E2_5253at 6046.129 kb on - strand, within Pf6N2E2_5253at 6046.129 kb on - strand, within Pf6N2E2_5253at 6046.138 kb on + strand, within Pf6N2E2_5253at 6046.138 kb on + strand, within Pf6N2E2_5253at 6046.138 kb on + strand, within Pf6N2E2_5253at 6046.139 kb on - strand, within Pf6N2E2_5253at 6046.139 kb on - strand, within Pf6N2E2_5253at 6046.139 kb on - strand, within Pf6N2E2_5253at 6046.139 kb on - strand, within Pf6N2E2_5253at 6046.292 kb on + strand, within Pf6N2E2_5253at 6046.326 kb on + strand, within Pf6N2E2_5253at 6046.326 kb on + strand, within Pf6N2E2_5253at 6046.326 kb on + strand, within Pf6N2E2_5253at 6046.327 kb on - strand, within Pf6N2E2_5253at 6046.386 kb on + strand, within Pf6N2E2_5253at 6046.386 kb on + strand, within Pf6N2E2_5253at 6046.505 kb on - strandat 6046.505 kb on - strandat 6046.505 kb on - strandat 6046.505 kb on - strandat 6046.506 kb on + strandat 6046.506 kb on + strandat 6046.506 kb on + strandat 6046.506 kb on + strandat 6046.506 kb on + strandat 6046.506 kb on + strandat 6046.507 kb on - strandat 6046.507 kb on - strandat 6046.507 kb on - strandat 6046.561 kb on + strandat 6046.561 kb on + strandat 6046.571 kb on - strandat 6046.571 kb on - strandat 6046.571 kb on - strandat 6046.583 kb on - strandat 6046.583 kb on - strandat 6046.583 kb on - strandat 6046.585 kb on + strandat 6046.645 kb on + strandat 6046.645 kb on + strandat 6046.645 kb on + strandat 6046.645 kb on + strandat 6046.645 kb on + strandat 6046.645 kb on + strandat 6046.646 kb on - strandat 6046.646 kb on - strandat 6046.646 kb on - strandat 6046.646 kb on - strandat 6046.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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6,044,466 - -0.9
6,044,466 - -0.1
6,044,466 - +0.6
6,044,466 - -0.6
6,044,470 - -1.2
6,044,470 - +0.9
6,044,470 - +1.6
6,044,470 - +0.7
6,044,512 - -0.8
6,044,512 - +0.9
6,044,527 - -0.8
6,044,553 - -0.9
6,044,553 - +1.8
6,044,553 - -0.1
6,044,598 - Pf6N2E2_5250 0.10 +0.9
6,044,609 + Pf6N2E2_5250 0.16 +0.7
6,044,610 - Pf6N2E2_5250 0.17 +0.9
6,044,663 + Pf6N2E2_5250 0.46 +0.0
6,044,663 + Pf6N2E2_5250 0.46 +0.1
6,044,663 + Pf6N2E2_5250 0.46 +1.0
6,044,663 + Pf6N2E2_5250 0.46 +0.2
6,044,664 - Pf6N2E2_5250 0.46 +0.6
6,044,664 - Pf6N2E2_5250 0.46 -0.6
6,044,664 - Pf6N2E2_5250 0.46 +2.0
6,044,664 - -0.4
6,044,784 + -0.0
6,044,785 - -0.9
6,044,943 + Pf6N2E2_5251 0.66 +0.7
6,044,967 + Pf6N2E2_5251 0.75 +0.2
6,044,968 - Pf6N2E2_5251 0.75 -0.8
6,044,968 - Pf6N2E2_5251 0.75 -0.2
6,045,009 + +0.2
6,045,009 + -0.2
6,045,009 + -0.8
6,045,009 + +0.9
6,045,009 + -0.2
6,045,010 - -1.3
6,045,030 + +0.2
6,045,030 + -0.0
6,045,030 + +0.1
6,045,031 - -0.0
6,045,366 + Pf6N2E2_5252 0.47 +0.2
6,045,366 + Pf6N2E2_5252 0.47 -3.1
6,045,367 - Pf6N2E2_5252 0.47 -2.0
6,045,644 + -0.1
6,045,644 + +0.5
6,045,760 + -0.2
6,045,760 + +0.0
6,045,760 + +0.7
6,045,760 + +0.1
6,045,760 + +0.5
6,045,761 - -0.4
6,045,761 - +1.7
6,045,761 - -0.8
6,045,761 - +0.2
6,045,761 - +0.9
6,045,761 - +0.4
6,045,761 - +0.3
6,045,761 - +0.1
6,045,761 - -0.7
6,045,761 - -0.4
6,045,938 + Pf6N2E2_5253 0.23 +0.8
6,046,113 + Pf6N2E2_5253 0.47 -0.2
6,046,113 + Pf6N2E2_5253 0.47 +0.2
6,046,113 + Pf6N2E2_5253 0.47 -0.7
6,046,114 - Pf6N2E2_5253 0.47 +0.6
6,046,114 - Pf6N2E2_5253 0.47 -0.3
6,046,114 - Pf6N2E2_5253 0.47 -1.4
6,046,114 - Pf6N2E2_5253 0.47 -1.3
6,046,128 + Pf6N2E2_5253 0.49 -0.4
6,046,128 + Pf6N2E2_5253 0.49 +0.9
6,046,129 - Pf6N2E2_5253 0.49 +1.1
6,046,129 - Pf6N2E2_5253 0.49 +0.7
6,046,138 + Pf6N2E2_5253 0.51 +0.5
6,046,138 + Pf6N2E2_5253 0.51 +0.4
6,046,138 + Pf6N2E2_5253 0.51 +0.1
6,046,139 - Pf6N2E2_5253 0.51 +0.4
6,046,139 - Pf6N2E2_5253 0.51 +1.6
6,046,139 - Pf6N2E2_5253 0.51 -1.2
6,046,139 - Pf6N2E2_5253 0.51 -0.2
6,046,292 + Pf6N2E2_5253 0.72 +0.2
6,046,326 + Pf6N2E2_5253 0.77 +0.8
6,046,326 + Pf6N2E2_5253 0.77 +0.4
6,046,326 + Pf6N2E2_5253 0.77 +0.6
6,046,327 - Pf6N2E2_5253 0.77 -0.4
6,046,386 + Pf6N2E2_5253 0.85 +0.3
6,046,386 + Pf6N2E2_5253 0.85 +0.8
6,046,505 - +0.6
6,046,505 - -0.0
6,046,505 - -1.5
6,046,505 - +1.9
6,046,506 + +1.3
6,046,506 + -0.4
6,046,506 + -0.0
6,046,506 + +0.7
6,046,506 + +1.2
6,046,506 + +1.5
6,046,507 - -2.9
6,046,507 - -0.5
6,046,507 - -1.1
6,046,561 + -0.4
6,046,561 + -0.1
6,046,571 - -0.2
6,046,571 - +0.4
6,046,571 - +0.2
6,046,583 - -0.2
6,046,583 - +0.4
6,046,583 - +0.5
6,046,585 + -1.0
6,046,645 + -0.3
6,046,645 + +1.2
6,046,645 + +0.1
6,046,645 + -0.1
6,046,645 + -0.5
6,046,645 + -1.7
6,046,646 - -0.2
6,046,646 - -0.4
6,046,646 - -0.0
6,046,646 - -1.4
6,046,672 + -0.8

Or see this region's nucleotide sequence